C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031565 Fscn1-001 ENSMUSG00000029581 10090 + 5:142960343-142973185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031565 46.051±4.44 35.226±4.26 33.424±2.27 167.319±84.32 95.986±30.15 9.485±0.93 12.094±1.67 9.077±0.94 8.697±8.83 9.146±1.34 2.751±1.39 88.217±34.87 81.661±34.20 1.804±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185
CIL_00027J CIL_00027J_0003 CGP 5:142960343-143113020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISS stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008144 IDA drug binding
GO:0015629 ISS actin cytoskeleton
GO:0016477 IMP cell migration
GO:0030036 IEA actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0030175 IDA filopodium
GO:0030674 IEA protein binding, bridging
GO:0044822 IEA poly(A) RNA binding
GO:0048870 ISS cell motility
GO:0051015 IMP actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0070062 IEA extracellular vesicular exosome
GO:0071437 ISS invadopodium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382361 FSCN1-001 protein_coding Homo_sapiens 0 1984
ENST00000405801 FSCN1-005 protein_coding Homo_sapiens 0 527
ENST00000444748 FSCN1-003 protein_coding Homo_sapiens 0 514
ENST00000447103 FSCN1-004 protein_coding Homo_sapiens 0 468
ENST00000473330 FSCN1-002 retained_intron Homo_sapiens 0 826
ENST00000568912 FSCN1P1-001 processed_pseudogene Homo_sapiens 0 1700

Loading