C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fascin actin-bundling protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382361 FSCN1-001 ENSG00000075618 9606 + 7:5592823-5606655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382361
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382361 27.833±0.00 36.026±0.00 0.564±0.00 33.331±23.09 15.129±13.23 2.922±2.28 2.391±2.19 6.151±2.99 3.894±2.27 16.948±15.14 0.649±0.50 122.022±104.22 100.865±11.55 42.976±20.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655
CIL_00027J CIL_00027J_0002 CGP 7:5592823-5781739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008144 IDA drug binding
GO:0008283 TAS cell proliferation
GO:0015629 IDA actin cytoskeleton
GO:0016477 IMP cell migration
GO:0030036 IDA actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0030175 IDA filopodium
GO:0030674 IEA protein binding, bridging
GO:0044822 IDA poly(A) RNA binding
GO:0048870 IDA cell motility
GO:0051015 IDA:IEA actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0071437 IDA invadopodium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031565 Fscn1-001 protein_coding Mus_musculus 0 1984
ENSMUST00000129306 Fscn1-002 protein_coding Mus_musculus 0 889
ENSMUST00000137552 Fscn1-005 protein_coding Mus_musculus 0 641
ENSMUST00000139131 Fscn1-004 protein_coding Mus_musculus 0 547
ENSMUST00000135293 Fscn1-006 retained_intron Mus_musculus 0 483
ENSMUST00000150622 Fscn1-003 protein_coding Mus_musculus 0 405

Loading