C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008CB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs498 VISTA 9606 12:113922562-114523201
GeneTranscriptPositionBiotype
ENSG00000089225 (TBX5)
T-box 5 		ENST00000310346 (TBX5-001) 114353931-114408442 protein_coding
ENST00000349716 (TBX5-003) 114353931-114408387 protein_coding
ENST00000405440 (TBX5-005) 114355381-114406084 protein_coding
ENST00000526441 (TBX5-002) 114366097-114403898 protein_coding
ENST00000552726 (TBX5-006) 114394878-114403949 processed_transcript
ENSG00000122965 (RBM19)
RNA binding motif protein 19 		ENST00000261741 (RBM19-001) 113822057-113966371 protein_coding
ENST00000392561 (RBM19-002) 113822054-113966310 protein_coding
ENST00000545145 (RBM19-003) 113816742-113966306 protein_coding
ENST00000546876 (RBM19-004) 113957863-113966209 processed_transcript
ENST00000552384 (RBM19-006) 113822687-113858904 nonsense_mediated_decay
ENST00000552386 (RBM19-005) 113914969-113927431 retained_intron
ENST00000553232 (RBM19-007) 113816738-113818179 processed_transcript
ENSG00000255399 (TBX5-AS1)
TBX5 antisense RNA 1 		ENST00000528549 (TBX5-AS1-005) 114408754-114412831 antisense
ENST00000531024 (TBX5-AS1-003) 114408205-114409999 antisense
ENST00000531202 (TBX5-AS1-002) 114408191-114410012 antisense
ENST00000532697 (TBX5-AS1-004) 114408196-114409614 antisense
ENSG00000257476 (RP11-139B1.1)
 ENST00000551761 (RP11-139B1.1-001) 114238970-114241770 lincRNA
ENSG00000257915 (GLULP5)
glutamate-ammonia ligase (glutamine synthetase) pseudogene 5 		ENST00000547831 (GLULP5-001) 114104542-114105931 processed_pseudogene
CIL_0008CB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs498 VISTA 10090 5:119676561-120277190
GeneTranscriptPositionBiotype
ENSMUSG00000018263 (Tbx5)
T-box 5 		ENSMUST00000018407 (Tbx5-201) 119834663-119885218 protein_coding
ENSMUSG00000018604 (Tbx3)
T-box 3 		ENSMUST00000018748 (Tbx3-001) 119671018-119684724 protein_coding
ENSMUST00000079719 (Tbx3-201) 119670669-119684561 protein_coding
ENSMUST00000121021 (Tbx3-002) 119670862-119684724 protein_coding
ENSMUST00000145647 (Tbx3-003) 119675445-119680630 retained_intron
ENSMUST00000154680 (Tbx3-004) 119680249-119680832 processed_transcript
ENSMUSG00000029594 (Rbm19)
RNA binding motif protein 19 		ENSMUST00000031590 (Rbm19-201) 120116510-120197979 protein_coding
ENSMUSG00000086847 (Tbx3os2)
T-box 3, opposite strand 2 		ENSMUST00000135385 (Tbx3os2-001) 119685095-119691218 processed_transcript
ENSMUSG00000097368 (Gm10390)
predicted gene 10390 		ENSMUST00000180812 (Gm10390-201) 120121103-120139261 lincRNA
ENSMUST00000181905 (Gm10390-202) 120131485-120139263 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008CB_0001ENSG00000089225ENST00000310346ENST00000349716ENST00000405440ENST00000526441ENST00000552726ENSG00000122965ENST00000261741ENST00000392561ENST00000545145ENST00000546876ENST00000552384ENST00000552386ENST00000553232ENSG00000255399ENST00000528549ENST00000531024ENST00000531202ENST00000532697ENSG00000257476ENST00000551761ENSG00000257915ENST00000547831CIL_0008CB_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000018604ENSMUST00000018748ENSMUST00000079719ENSMUST00000121021ENSMUST00000145647ENSMUST00000154680ENSMUSG00000029594ENSMUST00000031590ENSMUSG00000086847ENSMUST00000135385ENSMUSG00000097368ENSMUST00000180812ENSMUST00000181905
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008CB_0001ENSG00000089225ENST00000310346ENST00000349716ENST00000405440ENSG00000122965ENST00000261741ENST00000392561ENST00000545145ENST00000552384ENST00000553232ENSG00000255399ENST00000528549ENSG00000257476ENST00000551761ENSG00000257915ENST00000547831CIL_0008CB_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000018604ENSMUST00000018748ENSMUST00000079719ENSMUST00000121021ENSMUSG00000029594ENSMUST00000031590ENSMUSG00000086847ENSMUST00000135385ENSMUSG00000097368ENSMUST00000180812ENSMUST00000181905
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089225 ENST00000310346 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.491±0.00 N/A 0.006±0.00 2.140±0.00 N/A
ENST00000349716 0.132±0.00 N/A N/A 0.042±0.00 0.035±0.00 N/A N/A N/A N/A 1.467±0.00 0.060±0.00 0.089±0.04 N/A N/A
ENST00000405440 0.121±0.00 N/A N/A 0.034±0.00 0.590±0.40 N/A 4.736±3.64 N/A N/A 2.321±1.13 0.115±0.00 0.126±0.00 N/A 0.050±0.03
ENST00000526441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122965 ENST00000261741 2.596±0.00 3.687±0.00 1.465±0.00 1.107±0.04 1.833±0.15 2.806±0.01 1.115±0.51 1.657±1.29 1.343±0.00 3.509±0.82 3.560±0.00 2.695±1.16 3.504±1.49 2.102±0.95
ENST00000392561 2.316±0.00 1.874±0.00 0.615±0.00 1.778±0.00 0.889±0.00 2.875±0.00 1.293±1.03 0.522±0.00 2.236±0.00 N/A 8.596±0.00 3.138±0.00 2.614±0.51 2.944±0.43
ENST00000545145 1.287±0.00 4.018±0.00 N/A 1.322±0.59 2.445±0.00 N/A 0.661±0.49 2.026±0.00 0.562±0.04 1.837±0.00 N/A 2.171±0.93 0.579±0.00 1.582±0.30
ENST00000546876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.149±0.00 21.708±0.00 11.451±0.00 17.155±0.00
ENST00000552386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.673±0.00 6.500±0.00 N/A N/A
ENSG00000255399 ENST00000528549 N/A N/A N/A N/A 0.074±0.00 0.011±0.00 N/A N/A N/A 2.197±1.44 N/A 0.059±0.04 3.812±0.07 0.028±0.01
ENST00000531024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257476 ENST00000551761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.196±0.42
ENSG00000257915 ENST00000547831 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018263 ENSMUST00000018407 0.245±0.20 0.208±0.08 1.759±0.07 0.028±0.00 0.595±0.30 0.022±0.01 5.500±2.16 0.026±0.01 0.016±0.02 7.312±2.92 0.016±0.01 0.024±0.01 0.399±0.30 1.291±0.09
ENSMUSG00000018604 ENSMUST00000018748 1.862±1.35 66.346±2.15 5.464±1.04 0.061±0.00 3.623±1.99 1.795±0.70 0.603±0.14 0.700±0.10 1.929±1.63 7.618±1.70 0.719±0.03 7.121±3.03 1.500±0.47 0.233±0.11
ENSMUST00000079719 3.211±2.47 32.873±6.38 6.715±0.80 0.239±0.09 1.300±0.32 1.609±0.78 0.545±0.15 1.172±0.32 1.518±1.11 11.468±0.54 0.246±0.06 4.187±1.06 0.975±0.28 0.297±0.25
ENSMUST00000121021 2.151±1.34 27.049±3.37 7.280±0.19 0.296±0.14 3.380±0.96 1.439±0.39 0.745±0.31 0.934±0.55 0.253±0.08 6.640±2.51 0.616±0.22 7.439±2.66 2.896±1.46 0.208±0.12
ENSMUST00000145647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029594 ENSMUST00000031590 N/A 1.657±0.00 N/A 4.758±0.00 0.561±0.00 N/A 0.414±0.00 N/A 1.814±0.00 N/A 1.440±0.00 3.477±2.05 4.498±0.00 3.354±1.47
ENSMUSG00000086847 ENSMUST00000135385 0.135±0.05 0.398±0.09 2.908±0.11 0.027±0.02 0.512±0.13 0.091±0.04 0.021±0.00 0.022±0.00 0.020±0.02 0.091±0.05 N/A 0.122±0.08 0.253±0.12 0.070±0.05
ENSMUSG00000097368 ENSMUST00000180812 N/A N/A N/A 0.624±0.00 0.071±0.00 N/A N/A N/A N/A N/A N/A 1.785±0.00 1.458±0.79 0.715±0.00
ENSMUST00000181905 N/A 0.190±0.00 N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A 0.549±0.09 N/A N/A N/A

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