C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032874 Sh3gl3-001 ENSMUSG00000030638 10090 + 7:82174796-82307419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032874 0.962±0.02 0.336±0.14 7.606±0.31 6.178±1.18 0.264±0.05 1.290±0.00 0.131±0.00 0.153±0.00 0.026±0.01 0.241±0.09 0.047±0.00 0.479±0.35 0.354±0.12 23.784±2.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KR CIL_0006KR_0002 CGP 7:81966672-82307419
CIL_0007U9 CIL_0007U9_0002 VISTA 7:82082717-82683985
CIL_000406 CIL_000406_0002 CGP 7:82173840-82614450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324537 SH3GL3-001 protein_coding Homo_sapiens 0 1365
ENST00000427482 SH3GL3-002 protein_coding Homo_sapiens 0 1480
ENST00000467735 SH3GL3-004 processed_transcript Homo_sapiens 0 294
ENST00000492099 SH3GL3-003 retained_intron Homo_sapiens 0 272
ENST00000563901 SH3GL3-005 nonsense_mediated_decay Homo_sapiens 0 1434
ENST00000564054 SH3GL3-006 processed_transcript Homo_sapiens 0 490

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