C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006KR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169594-ENSG00000140600 CGP 9606 15:83255903-83618743
GeneTranscriptPositionBiotype
ENSG00000140600 (SH3GL3)
SH3-domain GRB2-like 3
ENST00000324537 (SH3GL3-001) 83447531-83618739 protein_coding
ENST00000427482 (SH3GL3-002) 83447228-83618743 protein_coding
ENST00000467735 (SH3GL3-004) 83609403-83618305 processed_transcript
ENST00000492099 (SH3GL3-003) 83447228-83565883 retained_intron
ENST00000563901 (SH3GL3-005) 83447376-83618739 nonsense_mediated_decay
ENST00000564054 (SH3GL3-006) 83609270-83618642 processed_transcript
ENSG00000169594 (BNC1)
basonuclin 1
ENST00000345382 (BNC1-001) 83255903-83284714 protein_coding
ENST00000569704 (BNC1-003) 83257344-83283319 protein_coding
ENST00000618086 (BNC1-201) 83255905-83284716 protein_coding
ENSG00000259986 (RP11-382A20.4)
ENST00000561498 (RP11-382A20.4-002) 83180802-83184796 antisense
ENST00000565495 (RP11-382A20.4-003) 83184805-83439445 antisense
ENST00000568634 (RP11-382A20.4-001) 83179182-83186068 antisense
CIL_0006KR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025105-ENSMUSG00000030638 CGP 10090 7:81966672-82307419
GeneTranscriptPositionBiotype
ENSMUSG00000025105 (Bnc1)
basonuclin 1
ENSMUST00000026096 (Bnc1-201) 81966672-81992299 protein_coding
ENSMUSG00000030638 (Sh3gl3)
SH3-domain GRB2-like 3
ENSMUST00000032874 (Sh3gl3-001) 82174796-82307419 protein_coding
ENSMUST00000177883 (Sh3gl3-005) 82174856-82307419 nonsense_mediated_decay
ENSMUST00000177895 (Sh3gl3-006) 82174950-82307419 nonsense_mediated_decay
ENSMUST00000178526 (Sh3gl3-008) 82270886-82307228 protein_coding
ENSMUST00000179150 (Sh3gl3-004) 82175234-82176292 processed_transcript
ENSMUST00000179318 (Sh3gl3-002) 82173840-82307087 protein_coding
ENSMUST00000179800 (Sh3gl3-009) 82174842-82270038 retained_intron
ENSMUST00000180183 (Sh3gl3-007) 82174195-82284095 protein_coding
ENSMUST00000180243 (Sh3gl3-003) 82175156-82284158 protein_coding
ENSMUSG00000052779 (4833418N17Rik)
RIKEN cDNA 4833418N17 gene
ENSMUST00000064826 (4833418N17Rik-201) 81992002-81992618 pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KR_0001ENSG00000140600ENST00000324537ENST00000427482ENST00000467735ENST00000492099ENST00000563901ENST00000564054ENSG00000169594ENST00000345382ENST00000569704ENST00000618086ENSG00000259986ENST00000561498ENST00000565495ENST00000568634CIL_0006KR_0002ENSMUSG00000025105ENSMUST00000026096ENSMUSG00000030638ENSMUST00000032874ENSMUST00000177883ENSMUST00000177895ENSMUST00000178526ENSMUST00000179150ENSMUST00000179318ENSMUST00000179800ENSMUST00000180183ENSMUST00000180243ENSMUSG00000052779ENSMUST00000064826
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KR_0001ENSG00000140600ENST00000324537ENST00000427482ENST00000467735ENST00000492099ENST00000563901ENST00000564054ENSG00000169594ENST00000345382ENST00000569704ENST00000618086ENSG00000259986ENST00000561498ENST00000565495ENST00000568634CIL_0006KR_0002ENSMUSG00000025105ENSMUST00000026096ENSMUSG00000030638ENSMUST00000032874ENSMUST00000177883ENSMUST00000177895ENSMUST00000178526ENSMUST00000179318ENSMUST00000179800ENSMUST00000180183ENSMUST00000180243ENSMUSG00000052779ENSMUST00000064826
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140600 ENST00000324537 0.011±0.00 0.057±0.00 N/A N/A 0.005±0.00 0.045±0.00 0.016±0.00 0.200±0.00 0.161±0.13 0.132±0.00 0.047±0.00 0.088±0.04 N/A N/A
ENST00000427482 N/A N/A N/A 13.166±0.17 N/A 0.134±0.00 N/A N/A 0.780±0.00 N/A N/A 0.513±0.16 0.115±0.00 5.366±0.00
ENST00000467735 N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A N/A 0.305±0.00 N/A N/A N/A
ENST00000492099 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563901 N/A N/A N/A 17.450±6.74 N/A N/A N/A 0.447±0.00 N/A 0.532±0.39 N/A 0.099±0.06 0.918±0.74 7.578±0.00
ENST00000564054 N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A 15.469±7.93
ENSG00000169594 ENST00000345382 0.010±0.00 N/A N/A 0.012±0.00 0.054±0.00 N/A 0.045±0.01 0.019±0.00 0.020±0.00 0.056±0.03 N/A 0.133±0.07 0.269±0.11 N/A
ENST00000569704 N/A N/A 0.015±0.00 N/A N/A 0.070±0.02 N/A 0.074±0.00 N/A 0.102±0.05 N/A 0.211±0.16 N/A N/A
ENST00000618086 0.010±0.00 N/A N/A 0.012±0.00 0.054±0.00 N/A 0.047±0.00 0.019±0.00 0.021±0.00 0.058±0.03 N/A 0.135±0.07 0.296±0.14 N/A
ENSG00000259986 ENST00000561498 0.403±0.00 0.754±0.00 0.660±0.00 0.231±0.00 0.369±0.00 0.500±0.00 0.276±0.13 0.317±0.00 N/A 0.546±0.00 0.266±0.00 0.470±0.38 N/A 0.169±0.02
ENST00000565495 0.533±0.00 2.488±0.00 N/A 0.690±0.00 1.150±0.00 0.311±0.00 0.787±0.00 0.993±0.00 0.311±0.00 0.100±0.00 0.506±0.00 4.688±0.00 N/A 0.218±0.00
ENST00000568634 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025105 ENSMUST00000026096 1.109±0.64 0.062±0.05 0.410±0.06 0.089±0.09 0.106±0.03 0.199±0.11 0.313±0.04 0.043±0.02 0.119±0.10 1.063±0.33 0.008±0.00 2.141±0.83 0.569±0.47 0.443±0.22
ENSMUSG00000030638 ENSMUST00000032874 0.962±0.02 0.336±0.14 7.606±0.31 6.178±1.18 0.264±0.05 1.290±0.00 0.131±0.00 0.153±0.00 0.026±0.01 0.241±0.09 0.047±0.00 0.479±0.35 0.354±0.12 23.784±2.66
ENSMUST00000177883 N/A 0.817±0.36 N/A N/A 0.270±0.16 0.870±0.00 0.314±0.17 0.079±0.02 0.030±0.00 N/A 0.036±0.00 0.468±0.34 0.569±0.00 N/A
ENSMUST00000177895 0.202±0.02 N/A 6.658±0.39 11.267±8.33 0.259±0.10 0.460±0.00 0.288±0.00 0.257±0.06 0.050±0.01 0.219±0.00 0.114±0.05 0.786±0.21 0.400±0.16 23.924±15.26
ENSMUST00000178526 N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.114±0.02 N/A 0.296±0.02 0.025±0.00 0.301±0.00 N/A N/A
ENSMUST00000179150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179318 N/A 0.197±0.10 N/A N/A 0.131±0.01 N/A N/A N/A N/A N/A N/A 0.530±0.04 0.209±0.00 23.087±23.42
ENSMUST00000179800 0.489±0.07 0.116±0.07 N/A N/A 0.071±0.03 0.113±0.08 0.047±0.01 N/A 0.018±0.00 0.057±0.03 0.022±0.00 0.241±0.17 0.097±0.00 5.639±0.99
ENSMUST00000180183 0.129±0.00 N/A N/A N/A N/A N/A 0.143±0.00 0.066±0.00 0.104±0.00 0.159±0.00 N/A 0.720±0.00 0.190±0.00 105.108±0.00
ENSMUST00000180243 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A 0.076±0.00 0.544±0.50 N/A N/A
ENSMUSG00000052779 ENSMUST00000064826 N/A 0.078±0.02 N/A N/A 0.112±0.06 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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