C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034426 Kars-201 ENSMUSG00000031948 10090 - 8:111993444-112011323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034426
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034426 18.961±0.95 10.454±1.08 24.606±1.92 23.275±9.55 17.113±3.81 23.552±3.97 17.532±0.93 20.951±1.73 25.678±13.67 17.365±1.74 23.885±1.63 33.587±6.05 37.693±24.41 28.188±6.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D7 CIL_0002D7_0002 CGP 8:111966908-112011323
CIL_0003YT CIL_0003YT_0002 CGP 8:111993440-112020528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004824 IEA lysine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006430 IEA lysyl-tRNA aminoacylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064924 kars-201 protein_coding Danio_rerio 0 891
ENSDART00000064926 kars-202 protein_coding Danio_rerio 0 885
ENSDART00000148429 kars-001 protein_coding Danio_rerio 0 863
ENST00000302445 KARS-001 protein_coding Homo_sapiens 0 2211
ENST00000319410 KARS-002 protein_coding Homo_sapiens 0 2170
ENST00000562875 KARS-006 nonsense_mediated_decay Homo_sapiens 0 791
ENST00000564578 KARS-004 nonsense_mediated_decay Homo_sapiens 0 1818
ENST00000566249 KARS-008 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000566560 KARS-003 retained_intron Homo_sapiens 0 1035
ENST00000566772 KARS-011 protein_coding Homo_sapiens 0 392
ENST00000568682 KARS-007 protein_coding Homo_sapiens 0 833
ENST00000569298 KARS-013 retained_intron Homo_sapiens 0 276
ENST00000570215 KARS-012 protein_coding Homo_sapiens 0 701
ENST00000571212 KARSP3-001 unprocessed_pseudogene Homo_sapiens 0 285

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