C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034848 Psma4-001 ENSMUSG00000032301 10090 + 9:54950790-54958030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034848 37.508±2.94 12.087±4.30 65.517±9.14 74.478±13.09 32.496±11.78 19.396±2.91 19.127±0.44 46.060±5.86 63.777±21.46 19.293±3.10 52.594±6.97 47.121±46.74 121.721±61.90 51.282±55.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0002 CGP 9:54950790-55007779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000044462 PSMA4-001 protein_coding Homo_sapiens 0 1164
ENST00000413382 PSMA4-004 protein_coding Homo_sapiens 0 808
ENST00000557929 PSMA4-005 processed_transcript Homo_sapiens 0 804
ENST00000558094 PSMA4-021 protein_coding Homo_sapiens 0 303
ENST00000558281 PSMA4-019 protein_coding Homo_sapiens 0 769
ENST00000558341 PSMA4-017 protein_coding Homo_sapiens 0 457
ENST00000558639 PSMA4-010 retained_intron Homo_sapiens 0 451
ENST00000559082 PSMA4-006 protein_coding Homo_sapiens 0 1151
ENST00000559146 PSMA4-018 protein_coding Homo_sapiens 0 446
ENST00000559154 PSMA4-020 protein_coding Homo_sapiens 0 449
ENST00000559365 PSMA4-015 protein_coding Homo_sapiens 0 942
ENST00000559437 PSMA4-016 protein_coding Homo_sapiens 0 898
ENST00000559934 PSMA4-002 retained_intron Homo_sapiens 0 937
ENST00000559948 PSMA4-014 protein_coding Homo_sapiens 0 785
ENST00000560033 PSMA4-007 retained_intron Homo_sapiens 0 246
ENST00000560099 PSMA4-003 retained_intron Homo_sapiens 0 808
ENST00000560217 PSMA4-009 protein_coding Homo_sapiens 0 876
ENST00000560737 PSMA4-012 protein_coding Homo_sapiens 0 992
ENST00000560842 PSMA4-011 retained_intron Homo_sapiens 8e-22 108

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