C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035935 Ccdc40-001 ENSMUSG00000039963 10090 + 11:119228572-119265212 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverMusclePlacentaENSMUST00000035935
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Muscle Placenta
ENSMUST00000035935 0.016±0.01 0.062±0.04 1.235±0.10 0.011±0.00 0.033±0.01 0.022±0.00 0.014±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0002 CGP 11:119143045-119265236
CIL_00003V CIL_00003V_0002 CGP 11:119228572-119285454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0003341 IMP cilium movement
GO:0003351 IEA epithelial cilium movement
GO:0003356 IEA regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005929 IDA cilium
GO:0030324 IMP lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397545 CCDC40-001 protein_coding Homo_sapiens 0 1620
ENST00000572253 CCDC40-005 retained_intron Homo_sapiens 0 368
ENST00000574799 CCDC40-004 retained_intron Homo_sapiens 0 1620
ENST00000575431 CCDC40-013 retained_intron Homo_sapiens 0 392

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