C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575431 CCDC40-013 ENSG00000141519 9606 + 17:80087514-80095337 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000575431
Transcript ID Ovary Placenta
ENST00000575431 2.287±0.00 0.138±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0001 CGP 17:79932343-80100613
CIL_00003V CIL_00003V_0001 CGP 17:80036632-80119879

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053440 Ccdc40-002 protein_coding Mus_musculus 0 392
ENSMUST00000035935 Ccdc40-001 protein_coding Mus_musculus 0 392
ENSMUST00000133788 Ccdc40-005 retained_intron Mus_musculus 0 270
ENSMUST00000155683 Ccdc40-006 retained_intron Mus_musculus 9e-21 104
ENSMUST00000126652 Ccdc40-003 processed_transcript Mus_musculus 1e-19 100

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