C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141519-ENSG00000171298 CGP 9606 17:80036632-80119879
GeneTranscriptPositionBiotype
ENSG00000141519 (CCDC40)
coiled-coil domain containing 40 		ENST00000269318 (CCDC40-002) 80036652-80067901 protein_coding
ENST00000374876 (CCDC40-003) 80036658-80066770 protein_coding
ENST00000374877 (CCDC40-201) 80036632-80090819 protein_coding
ENST00000397545 (CCDC40-001) 80036636-80100613 protein_coding
ENST00000571028 (CCDC40-012) 80058925-80067288 protein_coding
ENST00000572083 (CCDC40-010) 80036664-80040535 retained_intron
ENST00000572253 (CCDC40-005) 80081443-80097934 retained_intron
ENST00000572270 (CCDC40-008) 80036652-80040165 processed_transcript
ENST00000573474 (CCDC40-011) 80040005-80050224 nonsense_mediated_decay
ENST00000573903 (CCDC40-014) 80088105-80092145 processed_transcript
ENST00000574099 (CCDC40-007) 80036661-80040187 protein_coding
ENST00000574799 (CCDC40-004) 80048370-80100604 retained_intron
ENST00000574933 (CCDC40-016) 80087703-80088212 retained_intron
ENST00000575431 (CCDC40-013) 80087514-80095337 retained_intron
ENST00000576033 (CCDC40-009) 80036661-80040105 protein_coding
ENST00000576241 (CCDC40-015) 80036677-80047454 retained_intron
ENSG00000171298 (GAA)
glucosidase, alpha; acid 		ENST00000302262 (GAA-002) 80101704-80119879 protein_coding
ENST00000390015 (GAA-001) 80101594-80119877 protein_coding
ENST00000570716 (GAA-007) 80112384-80113271 retained_intron
ENST00000570803 (GAA-005) 80101556-80107718 protein_coding
ENST00000572080 (GAA-008) 80111002-80117082 nonsense_mediated_decay
ENST00000572803 (GAA-006) 80111733-80112948 retained_intron
ENST00000573556 (GAA-009) 80116826-80119275 retained_intron
ENST00000574376 (GAA-003) 80101597-80102733 processed_transcript
ENST00000577106 (GAA-004) 80101587-80105828 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00003V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039963-ENSMUSG00000025579 CGP 10090 11:119228572-119285454
GeneTranscriptPositionBiotype
ENSMUSG00000025579 (Gaa)
glucosidase, alpha, acid 		ENSMUST00000026666 (Gaa-002) 119268026-119285454 protein_coding
ENSMUST00000106258 (Gaa-003) 119268028-119273452 protein_coding
ENSMUST00000106259 (Gaa-001) 119267887-119285454 protein_coding
ENSMUST00000128753 (Gaa-004) 119270516-119275139 processed_transcript
ENSMUST00000132706 (Gaa-005) 119274568-119278326 protein_coding
ENSMUST00000138510 (Gaa-007) 119278876-119279488 processed_transcript
ENSMUST00000143288 (Gaa-008) 119277714-119281435 protein_coding
ENSMUST00000150562 (Gaa-006) 119274856-119275620 protein_coding
ENSMUSG00000039963 (Ccdc40)
coiled-coil domain containing 40 		ENSMUST00000035935 (Ccdc40-001) 119228572-119265212 protein_coding
ENSMUST00000053440 (Ccdc40-002) 119229129-119262900 protein_coding
ENSMUST00000125724 (Ccdc40-007) 119262872-119264306 retained_intron
ENSMUST00000126652 (Ccdc40-003) 119258927-119265236 processed_transcript
ENSMUST00000133788 (Ccdc40-005) 119253553-119264436 retained_intron
ENSMUST00000143066 (Ccdc40-004) 119238718-119251809 retained_intron
ENSMUST00000147037 (Ccdc40-011) 119228605-119231644 processed_transcript
ENSMUST00000150358 (Ccdc40-010) 119228599-119231728 processed_transcript
ENSMUST00000155683 (Ccdc40-006) 119259766-119263120 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003V_0001ENSG00000141519ENST00000269318ENST00000374876ENST00000374877ENST00000397545ENST00000571028ENST00000572083ENST00000572253ENST00000572270ENST00000573474ENST00000573903ENST00000574099ENST00000574799ENST00000574933ENST00000575431ENST00000576033ENST00000576241ENSG00000171298ENST00000302262ENST00000390015ENST00000570716ENST00000570803ENST00000572080ENST00000572803ENST00000573556ENST00000574376ENST00000577106CIL_00003V_0002ENSMUSG00000025579ENSMUST00000026666ENSMUST00000106258ENSMUST00000106259ENSMUST00000128753ENSMUST00000132706ENSMUST00000138510ENSMUST00000143288ENSMUST00000150562ENSMUSG00000039963ENSMUST00000035935ENSMUST00000053440ENSMUST00000125724ENSMUST00000126652ENSMUST00000133788ENSMUST00000143066ENSMUST00000147037ENSMUST00000150358ENSMUST00000155683
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003V_0001ENSG00000141519ENST00000269318ENST00000374876ENST00000374877ENST00000397545ENST00000572083ENST00000572253ENST00000572270ENST00000573474ENST00000574799ENST00000575431ENST00000576241ENSG00000171298ENST00000302262ENST00000390015ENST00000570803ENST00000572080ENST00000577106CIL_00003V_0002ENSMUSG00000025579ENSMUST00000026666ENSMUST00000106258ENSMUST00000106259ENSMUST00000132706ENSMUSG00000039963ENSMUST00000035935ENSMUST00000053440ENSMUST00000125724ENSMUST00000126652ENSMUST00000133788ENSMUST00000143066ENSMUST00000147037ENSMUST00000150358ENSMUST00000155683
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141519 ENST00000269318 N/A N/A N/A N/A N/A N/A 0.436±0.00 0.896±0.00 0.195±0.00 1.301±0.00 N/A N/A 0.102±0.00 N/A
ENST00000374876 N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.494±0.00 0.335±0.00 N/A
ENST00000374877 N/A N/A N/A 0.333±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A 1.032±0.00 0.037±0.00 N/A
ENST00000397545 N/A 0.240±0.00 N/A 0.472±0.00 N/A 0.296±0.00 0.166±0.00 0.830±0.00 0.177±0.05 2.752±0.00 0.098±0.00 3.705±0.00 N/A 5.716±1.66
ENST00000571028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572083 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572253 N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A
ENST00000572270 N/A N/A N/A N/A N/A N/A 0.298±0.00 N/A N/A N/A 0.446±0.00 0.865±0.00 N/A N/A
ENST00000573474 N/A N/A N/A 1.776±0.00 N/A 1.339±0.00 0.715±0.00 0.738±0.00 0.961±0.00 N/A N/A 2.729±0.00 0.329±0.13 N/A
ENST00000573903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574799 N/A N/A N/A N/A 0.880±0.00 N/A 0.154±0.00 N/A 0.120±0.04 0.190±0.00 N/A 1.300±0.97 0.083±0.00 5.966±4.53
ENST00000574933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.287±0.00 0.138±0.00 N/A
ENST00000576033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A
ENSG00000171298 ENST00000302262 N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A 0.538±0.00 N/A N/A N/A 28.920±13.99
ENST00000390015 5.698±0.00 4.510±0.00 0.870±0.00 1.303±0.69 5.904±0.00 3.094±2.90 5.123±0.00 10.166±0.00 4.719±3.15 6.670±4.67 14.611±0.00 4.475±2.93 76.148±7.74 16.349±2.70
ENST00000570716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A
ENST00000572080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.821±0.00 N/A N/A
ENST00000572803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577106 N/A N/A N/A N/A N/A 0.861±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025579 ENSMUST00000026666 28.340±5.13 56.800±7.44 20.492±0.62 23.913±8.55 27.028±1.97 17.035±3.37 18.581±4.76 15.982±3.84 13.542±5.23 16.609±3.50 32.125±4.14 48.994±11.94 28.326±12.51 3.027±1.36
ENSMUST00000106258 N/A N/A N/A N/A 15.513±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106259 39.420±7.55 52.545±11.11 24.410±0.20 15.243±1.49 52.411±4.76 29.485±3.23 34.107±1.65 38.856±2.08 13.391±7.02 46.090±1.01 41.821±2.70 43.775±20.80 19.813±8.90 13.025±1.36
ENSMUST00000128753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132706 N/A N/A N/A 68.907±0.00 N/A N/A N/A N/A N/A N/A N/A 28.487±0.00 18.597±0.00 N/A
ENSMUST00000138510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039963 ENSMUST00000035935 0.016±0.01 0.062±0.04 N/A 1.235±0.10 0.011±0.00 N/A N/A 0.033±0.01 0.022±0.00 N/A 0.014±0.00 N/A 0.028±0.00 N/A
ENSMUST00000053440 N/A 0.038±0.00 0.029±0.00 0.842±0.28 0.022±0.01 0.028±0.00 0.092±0.06 0.030±0.00 0.011±0.00 0.548±0.00 0.013±0.00 4.419±4.04 0.206±0.14 28.267±31.32
ENSMUST00000125724 N/A 0.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126652 0.016±0.00 0.111±0.06 0.163±0.06 1.898±0.12 0.094±0.06 0.206±0.09 0.096±0.06 0.050±0.04 0.168±0.15 1.551±0.43 0.035±0.02 3.490±1.09 0.514±0.25 16.711±4.86
ENSMUST00000133788 0.144±0.07 0.173±0.00 0.170±0.00 N/A 0.097±0.04 0.138±0.01 0.147±0.00 0.075±0.02 N/A N/A N/A N/A N/A N/A
ENSMUST00000143066 N/A 0.135±0.06 N/A N/A 0.042±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000147037 N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000150358 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155683 N/A N/A N/A N/A 0.486±0.00 0.504±0.00 N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A

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