C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397545 CCDC40-001 ENSG00000141519 9606 + 17:80036636-80100613 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleOvaryTestisENST00000397545
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000397545 0.240±0.00 0.472±0.00 0.296±0.00 0.166±0.00 0.830±0.00 0.177±0.05 2.752±0.00 0.098±0.00 3.705±0.00 5.716±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0001 CGP 17:79932343-80100613
CIL_00003V CIL_00003V_0001 CGP 17:80036632-80119879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003341 IEA cilium movement
GO:0003351 IMP epithelial cilium movement
GO:0003356 IMP regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005929 ISS cilium
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 IMP axonemal dynein complex assembly
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035935 Ccdc40-001 protein_coding Mus_musculus 0 1620
ENSMUST00000053440 Ccdc40-002 protein_coding Mus_musculus 0 1495
ENSMUST00000133788 Ccdc40-005 retained_intron Mus_musculus 0 403
ENSMUST00000126652 Ccdc40-003 processed_transcript Mus_musculus 0 263
ENSMUST00000155683 Ccdc40-006 retained_intron Mus_musculus 1.00053e-42 180

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