C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036646 Cnot6l-002 ENSMUSG00000034724 10090 - 5:96075589-96161755 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000036646
Transcript ID Adrenal
ENSMUST00000036646 1.806±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069Y CIL_00069Y_0002 CGP 5:95956928-96164171
CIL_0007HW CIL_0007HW_0003 CGP 5:96070333-96266727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 IMP nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0004535 IMP poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008284 IMP positive regulation of cell proliferation
GO:0061157 IMP mRNA destabilization
GO:0090503 IMP RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000076807 cnot6l-001 protein_coding Danio_rerio 0 752
ENSDART00000147121 cnot6l-002 processed_transcript Danio_rerio 1e-37 163
ENST00000504123 CNOT6L-001 protein_coding Homo_sapiens 0 3099
ENST00000504804 CNOT6L-007 nonsense_mediated_decay Homo_sapiens 0 3059
ENST00000505983 CNOT6L-008 protein_coding Homo_sapiens 0 1195
ENST00000506166 CNOT6L-003 processed_transcript Homo_sapiens 0 878
ENST00000508371 CNOT6L-009 retained_intron Homo_sapiens 0 538
ENST00000512485 CNOT6L-005 protein_coding Homo_sapiens 0 2987
ENST00000515441 CNOT6L-006 protein_coding Homo_sapiens 0 808
ENST00000515506 CNOT6L-004 protein_coding Homo_sapiens 0 2080
ENST00000559681 CNOT6LP1-001 processed_pseudogene Homo_sapiens 0 2113

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