C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000076807 cnot6l-001 ENSDARG00000054597 7955 - 5:40386938-40424923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000076807
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000076807 0.914±0.00 74.893±6.89 12.057±0.00 3.378±0.00 47.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HW CIL_0007HW_0001 CGP 5:40386938-40435021

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004518 IEA nuclease activity
GO:0004527 IEA exonuclease activity
GO:0004535 IEA poly(A)-specific ribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0016787 IEA hydrolase activity
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036646 Cnot6l-002 nonsense_mediated_decay Mus_musculus 0 752
ENSMUST00000113005 Cnot6l-201 protein_coding Mus_musculus 0 756
ENSMUST00000122003 Cnot6l-003 protein_coding Mus_musculus 0 616
ENSMUST00000129646 Cnot6l-007 protein_coding Mus_musculus 0 237
ENSMUST00000137207 Cnot6l-006 protein_coding Mus_musculus 1e-28 130
ENSMUST00000141383 Cnot6l-008 protein_coding Mus_musculus 5e-36 154
ENSMUST00000154500 Cnot6l-004 protein_coding Mus_musculus 8e-28 126
ENSMUST00000155901 Cnot6l-001 protein_coding Mus_musculus 0 763
ENST00000504123 CNOT6L-001 protein_coding Homo_sapiens 0 782
ENST00000504804 CNOT6L-007 nonsense_mediated_decay Homo_sapiens 0 780
ENST00000506166 CNOT6L-003 processed_transcript Homo_sapiens 0 305
ENST00000512485 CNOT6L-005 protein_coding Homo_sapiens 0 791
ENST00000515441 CNOT6L-006 protein_coding Homo_sapiens 0 300
ENST00000515506 CNOT6L-004 protein_coding Homo_sapiens 0 640
ENST00000559681 CNOT6LP1-001 processed_pseudogene Homo_sapiens 7e-26 122

Loading