C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504123 CNOT6L-001 ENSG00000138767 9606 - 4:77713387-77819368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartOvaryPlacentaTestisENST00000504123
Transcript ID Adrenal Brain Breast Heart Ovary Placenta Testis
ENST00000504123 1.756±0.00 0.823±0.14 1.982±0.60 0.668±0.00 1.850±1.88 0.572±0.13 0.689±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069Y CIL_00069Y_0001 CGP 4:77511753-77819615
CIL_0007HW CIL_0007HW_0002 CGP 4:77713387-77952790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0004535 TAS poly(A)-specific ribonuclease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0010606 IMP positive regulation of cytoplasmic mRNA processing body assembly
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0046872 IEA metal ion binding
GO:0061157 IEA mRNA destabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113005 Cnot6l-201 protein_coding Mus_musculus 0 3125
ENSMUST00000155901 Cnot6l-001 protein_coding Mus_musculus 0 3118
ENSMUST00000036646 Cnot6l-002 nonsense_mediated_decay Mus_musculus 0 3099
ENSMUST00000122003 Cnot6l-003 protein_coding Mus_musculus 0 2106
ENSMUST00000152490 Cnot6l-005 retained_intron Mus_musculus 0 1694
ENSDART00000076807 cnot6l-001 protein_coding Danio_rerio 0 782
ENSMUST00000129646 Cnot6l-007 protein_coding Mus_musculus 0 734
ENSMUST00000141383 Cnot6l-008 protein_coding Mus_musculus 0 508
ENSMUST00000137207 Cnot6l-006 protein_coding Mus_musculus 0 440
ENSMUST00000154500 Cnot6l-004 protein_coding Mus_musculus 0 274
ENSMUST00000137066 Cnot6l-009 retained_intron Mus_musculus 0 263
ENSDART00000147121 cnot6l-002 processed_transcript Danio_rerio 7e-38 165

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