C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO/sentrin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037484 Senp6-001 ENSMUSG00000034252 10090 + 9:80066903-80144953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000037484
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000037484 1.341±0.70 1.260±0.16 3.157±0.43 1.500±0.48 1.829±0.70 0.770±0.13 1.933±0.50 1.081±0.43 2.762±0.69 0.967±0.10 1.868±0.60 1.274±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PT CIL_0006PT_0002 CGP 9:79815051-80144953
CIL_0006PS CIL_0006PS_0002 CGP 9:80066903-80311729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0016925 IEA protein sumoylation
GO:0016926 ISS protein desumoylation
GO:0016929 ISS SUMO-specific protease activity
GO:0070646 ISS protein modification by small protein removal
GO:0090169 ISS regulation of spindle assembly
GO:0090234 ISS regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327284 SENP6-010 protein_coding Homo_sapiens 0 1306
ENST00000370010 SENP6-002 protein_coding Homo_sapiens 0 2684
ENST00000424947 SENP6-007 protein_coding Homo_sapiens 0 1306
ENST00000447266 SENP6-004 protein_coding Homo_sapiens 0 2684
ENST00000474906 SENP6-009 retained_intron Homo_sapiens 0 520
ENST00000476060 SENP6-008 retained_intron Homo_sapiens 0 315
ENST00000483859 SENP6-003 protein_coding Homo_sapiens 0 560
ENST00000487548 SENP6-005 retained_intron Homo_sapiens 3e-39 165
ENST00000493959 SENP6-001 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000503501 SENP6-011 nonsense_mediated_decay Homo_sapiens 0 1267

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