C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO1/sentrin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447266 SENP6-004 ENSG00000112701 9606 + 6:75602047-75718278 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonLiverLungMuscleOvaryPlacentaTestisENST00000447266
Transcript ID Adipose Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000447266 0.751±0.00 2.049±0.28 1.829±1.46 0.990±0.00 0.921±0.00 2.863±0.00 0.488±0.00 1.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PT CIL_0006PT_0001 CGP 6:75291859-75718278
CIL_0006PS CIL_0006PS_0001 CGP 6:75601509-75919537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006508 IEA proteolysis
GO:0008234 IEA cysteine-type peptidase activity
GO:0016925 IEA protein sumoylation
GO:0016926 IMP protein desumoylation
GO:0016929 IMP SUMO-specific protease activity
GO:0070646 IDA protein modification by small protein removal
GO:0090169 IMP regulation of spindle assembly
GO:0090234 IMP regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165607 Senp6-006 protein_coding Mus_musculus 0 2684
ENSMUST00000175999 Senp6-007 nonsense_mediated_decay Mus_musculus 0 2684
ENSMUST00000164859 Senp6-002 protein_coding Mus_musculus 0 2684
ENSMUST00000037484 Senp6-001 protein_coding Mus_musculus 0 2684
ENSMUST00000176607 Senp6-004 protein_coding Mus_musculus 0 2601
ENSMUST00000175758 Senp6-008 retained_intron Mus_musculus 0 1040
ENSMUST00000176527 Senp6-014 protein_coding Mus_musculus 0 664
ENSMUST00000175673 Senp6-003 retained_intron Mus_musculus 0 619
ENSMUST00000175722 Senp6-012 retained_intron Mus_musculus 0 586
ENSMUST00000176563 Senp6-013 retained_intron Mus_musculus 0 455
ENSMUST00000176640 Senp6-009 protein_coding Mus_musculus 0 446
ENSMUST00000176360 Senp6-005 protein_coding Mus_musculus 0 418
ENSMUST00000175910 Senp6-015 processed_transcript Mus_musculus 0 228
ENSMUST00000177544 Senp6-010 processed_transcript Mus_musculus 9e-21 108

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