C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006PT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118407-ENSG00000112701 CGP 9606 6:75291859-75718278
GeneTranscriptPositionBiotype
ENSG00000118407 (FILIP1)
filamin A interacting protein 1 		ENST00000237172 (FILIP1-001) 75308084-75493738 protein_coding
ENST00000370020 (FILIP1-002) 75308092-75363003 protein_coding
ENST00000393004 (FILIP1-004) 75291859-75493629 protein_coding
ENST00000498523 (FILIP1-003) 75308088-75334790 processed_transcript
ENSG00000200091 (RN7SKP163)
RNA, 7SK small nuclear pseudogene 163 		ENST00000363221 (RN7SKP163-201) 75654970-75655299 misc_RNA
ENSG00000201291 (RNU1-34P)
RNA, U1 small nuclear 34, pseudogene 		ENST00000364421 (RNU1-34P-201) 75473738-75473894 snRNA
ENSG00000203489 (HMGB1P39)
high mobility group box 1 pseudogene 39 		ENST00000366304 (HMGB1P39-001) 75319101-75319980 processed_pseudogene
ENSG00000217488 (RP11-474L11.5)
 ENST00000402263 (RP11-474L11.5-001) 75611190-75611945 transcribed_processed_pseudogene
ENST00000533798 (RP11-474L11.5-002) 75610958-75611788 processed_transcript
ENSG00000217680 (RP11-415D17.1)
 ENST00000407776 (RP11-415D17.1-001) 75465123-75465570 processed_pseudogene
ENSG00000219722 (RPL26P20)
ribosomal protein L26 pseudogene 20 		ENST00000403318 (RPL26P20-001) 75499705-75500136 processed_pseudogene
ENSG00000220730 (RP11-474L11.3)
 ENST00000402607 (RP11-474L11.3-001) 75586122-75586461 processed_pseudogene
ENSG00000221332 (U3)
Small nucleolar RNA U3 		ENST00000408405 (U3.1-238) 75398860-75399067 snoRNA
ENSG00000238156 (RP11-415D17.4)
 ENST00000455530 (RP11-415D17.4-001) 75454944-75458900 lincRNA
ENSG00000252498 (RNU6-1016P)
RNA, U6 small nuclear 1016, pseudogene 		ENST00000516689 (RNU6-1016P-201) 75644084-75644177 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006PT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034898-ENSMUSG00000034252 CGP 10090 9:79815051-80144953
GeneTranscriptPositionBiotype
ENSMUSG00000034252 (Senp6)
SUMO/sentrin specific peptidase 6 		ENSMUST00000037484 (Senp6-001) 80066903-80144953 protein_coding
ENSMUST00000164859 (Senp6-002) 80066973-80144168 protein_coding
ENSMUST00000165607 (Senp6-006) 80067493-80143906 protein_coding
ENSMUST00000175673 (Senp6-003) 80066903-80094484 retained_intron
ENSMUST00000175722 (Senp6-012) 80139025-80143709 retained_intron
ENSMUST00000175758 (Senp6-008) 80136373-80144171 retained_intron
ENSMUST00000175910 (Senp6-015) 80114039-80122051 processed_transcript
ENSMUST00000175999 (Senp6-007) 80067099-80144781 nonsense_mediated_decay
ENSMUST00000176360 (Senp6-005) 80092303-80121979 protein_coding
ENSMUST00000176527 (Senp6-014) 80123797-80136572 protein_coding
ENSMUST00000176563 (Senp6-013) 80142045-80144005 retained_intron
ENSMUST00000176607 (Senp6-004) 80103172-80143712 protein_coding
ENSMUST00000176640 (Senp6-009) 80066936-80113753 protein_coding
ENSMUST00000176648 (Senp6-011) 80114022-80118747 protein_coding
ENSMUST00000177544 (Senp6-010) 80067817-80087498 processed_transcript
ENSMUSG00000034898 (Filip1)
filamin A interacting protein 1 		ENSMUST00000093811 (Filip1-001) 79815051-79977804 protein_coding
ENSMUST00000172740 (Filip1-003) 79815057-79830998 processed_transcript
ENSMUST00000172973 (Filip1-002) 79820661-79962033 protein_coding
ENSMUSG00000084917 (Gm17477)
predicted gene, 17477 		ENSMUST00000165458 (Gm17477-001) 80118895-80121937 lincRNA
ENSMUSG00000088908 (Gm25433)
predicted gene, 25433 		ENSMUST00000158283 (Gm25433-201) 80037429-80037714 misc_RNA
ENSMUSG00000092565 (Gm20477)
predicted gene 20477 		ENSMUST00000174028 (Gm20477-001) 79838108-79838387 processed_pseudogene
ENSMUSG00000092581 (Gm3211)
predicted gene 3211 		ENSMUST00000172721 (Gm3211-001) 79913200-79913631 processed_transcript
ENSMUSG00000093779 (Gm20648)
predicted gene 20648 		ENSMUST00000175815 (Gm20648-001) 80073429-80073756 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PT_0001ENSG00000118407ENST00000237172ENST00000370020ENST00000393004ENST00000498523ENSG00000200091ENST00000363221ENSG00000201291ENST00000364421ENSG00000203489ENST00000366304ENSG00000217488ENST00000402263ENST00000533798ENSG00000217680ENST00000407776ENSG00000219722ENST00000403318ENSG00000220730ENST00000402607ENSG00000221332ENST00000408405ENSG00000238156ENST00000455530ENSG00000252498ENST00000516689CIL_0006PT_0002ENSMUSG00000034252ENSMUST00000037484ENSMUST00000164859ENSMUST00000165607ENSMUST00000175673ENSMUST00000175722ENSMUST00000175758ENSMUST00000175910ENSMUST00000175999ENSMUST00000176360ENSMUST00000176527ENSMUST00000176563ENSMUST00000176607ENSMUST00000176640ENSMUST00000176648ENSMUST00000177544ENSMUSG00000034898ENSMUST00000093811ENSMUST00000172740ENSMUST00000172973ENSMUSG00000084917ENSMUST00000165458ENSMUSG00000088908ENSMUST00000158283ENSMUSG00000092565ENSMUST00000174028ENSMUSG00000092581ENSMUST00000172721ENSMUSG00000093779ENSMUST00000175815
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006PT_0001ENSG00000118407ENST00000237172ENST00000370020ENST00000393004ENST00000498523ENSG00000200091ENST00000363221ENSG00000201291ENST00000364421ENSG00000203489ENST00000366304ENSG00000217488ENST00000402263ENST00000533798ENSG00000217680ENST00000407776ENSG00000219722ENST00000403318ENSG00000220730ENST00000402607ENSG00000221332ENST00000408405ENSG00000238156ENST00000455530ENSG00000252498ENST00000516689CIL_0006PT_0002ENSMUSG00000034252ENSMUST00000037484ENSMUST00000164859ENSMUST00000165607ENSMUST00000175673ENSMUST00000175758ENSMUST00000175999ENSMUST00000176360ENSMUST00000176607ENSMUST00000176640ENSMUST00000176648ENSMUSG00000034898ENSMUST00000093811ENSMUST00000172740ENSMUST00000172973ENSMUSG00000084917ENSMUST00000165458ENSMUSG00000088908ENSMUST00000158283ENSMUSG00000092565ENSMUST00000174028ENSMUSG00000092581ENSMUST00000172721ENSMUSG00000093779ENSMUST00000175815
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118407 ENST00000237172 1.331±0.00 0.892±0.00 0.119±0.00 0.324±0.00 1.014±0.29 1.524±0.00 6.955±0.22 0.654±0.00 11.718±0.00 2.394±0.72 4.502±0.00 0.236±0.07 0.872±0.45 0.664±0.00
ENST00000370020 N/A N/A N/A 0.803±0.35 N/A N/A N/A 0.348±0.00 N/A N/A N/A 0.564±0.16 1.016±0.00 1.137±0.00
ENST00000393004 1.890±0.00 1.572±0.00 0.314±0.00 0.426±0.00 1.159±0.21 3.152±1.39 14.746±8.37 0.758±0.00 7.887±0.00 1.607±0.23 8.261±6.23 0.398±0.17 0.330±0.11 1.812±0.00
ENST00000498523 N/A N/A N/A N/A N/A 2.605±0.00 N/A N/A N/A 1.252±0.00 N/A 0.209±0.00 1.251±0.00 2.851±2.01
ENSG00000200091 ENST00000363221 0.463±0.00 0.697±0.00 0.203±0.00 0.482±0.00 0.052±0.00 N/A N/A N/A 0.516±0.00 N/A N/A 0.390±0.00 N/A 0.094±0.00
ENSG00000201291 ENST00000364421 N/A 0.373±0.00 N/A N/A N/A N/A 0.816±0.60 N/A N/A N/A N/A N/A N/A N/A
ENSG00000203489 ENST00000366304 0.072±0.00 0.245±0.00 N/A 0.146±0.05 0.197±0.03 0.121±0.07 0.346±0.15 0.096±0.00 0.114±0.08 0.083±0.05 0.086±0.00 0.143±0.10 0.079±0.02 0.116±0.09
ENSG00000217488 ENST00000402263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00
ENST00000533798 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A 0.030±0.00 0.776±0.00 N/A 0.083±0.00 N/A N/A
ENSG00000217680 ENST00000407776 N/A 0.313±0.00 0.121±0.00 N/A 0.050±0.00 N/A 0.292±0.00 N/A N/A N/A N/A 0.064±0.00 N/A 0.043±0.00
ENSG00000219722 ENST00000403318 N/A N/A N/A N/A N/A N/A 0.051±0.03 N/A N/A N/A N/A 0.052±0.00 N/A N/A
ENSG00000220730 ENST00000402607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00
ENSG00000221332 ENST00000408405 N/A N/A N/A 0.149±0.00 N/A N/A 0.463±0.00 N/A 0.938±0.00 N/A N/A N/A N/A 1.995±0.13
ENSG00000238156 ENST00000455530 N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A 0.052±0.00 0.087±0.00 0.085±0.02 0.421±0.37
ENSG00000252498 ENST00000516689 N/A N/A N/A N/A 1.739±0.00 N/A N/A N/A N/A N/A N/A N/A 1.204±0.00 3.428±2.83
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034252 ENSMUST00000037484 1.341±0.70 N/A 1.260±0.16 3.157±0.43 1.500±0.48 1.829±0.70 0.770±0.13 1.933±0.50 1.081±0.43 2.762±0.69 0.967±0.10 1.868±0.60 1.274±0.09 N/A
ENSMUST00000164859 0.926±0.20 N/A 2.761±0.47 3.341±0.33 0.445±0.00 N/A 0.863±0.21 1.517±0.44 1.695±0.84 N/A 2.139±0.64 2.252±0.00 4.358±1.69 3.942±0.79
ENSMUST00000165607 1.877±0.14 N/A 3.605±1.31 8.566±6.56 0.697±0.11 N/A 0.795±0.19 N/A 2.469±0.67 N/A 3.357±0.56 22.786±6.74 11.772±7.10 6.090±4.15
ENSMUST00000175673 N/A 6.230±1.94 N/A N/A 5.300±1.91 3.674±1.95 N/A 3.100±0.00 N/A N/A N/A 8.381±3.97 N/A N/A
ENSMUST00000175722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175758 1.942±0.22 N/A 5.150±0.04 4.295±0.00 2.635±1.25 N/A 3.090±0.34 4.695±1.28 2.911±1.13 5.605±0.00 4.256±0.84 21.070±6.82 8.607±5.16 N/A
ENSMUST00000175910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175999 N/A N/A N/A N/A N/A N/A N/A 0.872±0.00 N/A 1.405±0.00 1.561±0.00 N/A N/A N/A
ENSMUST00000176360 N/A N/A N/A N/A 3.978±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176607 1.554±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.256±0.00 N/A N/A
ENSMUST00000176640 3.166±0.47 5.434±0.56 N/A N/A 4.137±0.92 4.102±1.49 3.213±0.00 3.797±0.87 0.841±0.15 5.435±1.18 N/A 4.226±1.37 N/A 10.532±2.74
ENSMUST00000176648 N/A N/A N/A N/A N/A N/A N/A 5.345±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000177544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034898 ENSMUST00000093811 2.991±0.04 1.137±0.41 8.322±1.57 0.182±0.00 0.476±0.00 0.708±0.38 N/A 0.186±0.05 0.080±0.02 0.931±0.50 8.032±1.01 1.029±0.54 0.541±0.39 1.177±0.00
ENSMUST00000172740 2.304±1.22 4.328±1.88 1.812±0.82 0.494±0.19 0.680±0.28 1.490±0.53 3.483±0.67 0.224±0.08 0.101±0.04 2.032±0.91 N/A 1.584±0.96 0.382±0.33 8.327±12.74
ENSMUST00000172973 N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000084917 ENSMUST00000165458 N/A N/A N/A N/A 0.755±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088908 ENSMUST00000158283 N/A N/A N/A 0.232±0.17 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092565 ENSMUST00000174028 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 0.297±0.00 N/A N/A N/A
ENSMUSG00000092581 ENSMUST00000172721 N/A 0.625±0.06 0.091±0.03 N/A 1.451±0.71 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.14
ENSMUSG00000093779 ENSMUST00000175815 0.267±0.04 0.562±0.06 N/A N/A N/A 0.508±0.00 0.199±0.00 0.257±0.00 0.467±0.23 1.307±0.00 N/A 1.253±0.21 0.598±0.00 N/A

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