C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: islet cell autoantigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038403 Ica1-001 ENSMUSG00000062995 10090 - 6:8630527-8778484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000038403
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000038403 0.865±0.31 1.133±0.34 6.475±2.45 5.305±0.53 0.172±0.00 1.392±0.39 1.143±0.16 0.739±0.39 1.112±0.80 1.096±0.41 0.437±0.23 0.309±0.10 1.075±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EL CIL_0002EL_0002 CGP 6:8509600-8778488
CIL_0002VG CIL_0002VG_0002 CGP 6:8630527-9249032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0003674 ND molecular_function
GO:0005829 IDA cytosol
GO:0006836 IEA neurotransmitter transport
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030667 ISS secretory granule membrane
GO:0030672 IDA synaptic vesicle membrane
GO:0046928 NAS regulation of neurotransmitter secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265577 ICA1-002 protein_coding Homo_sapiens 0 1816
ENST00000317367 ICA1-008 protein_coding Homo_sapiens 0 1037
ENST00000339809 ICA1-004 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000396675 ICA1-007 protein_coding Homo_sapiens 0 1666
ENST00000401396 ICA1-006 protein_coding Homo_sapiens 0 1631
ENST00000402384 ICA1-001 protein_coding Homo_sapiens 0 1893
ENST00000406470 ICA1-201 protein_coding Homo_sapiens 0 1720
ENST00000407906 ICA1-003 protein_coding Homo_sapiens 0 1123
ENST00000422063 ICA1-202 protein_coding Homo_sapiens 0 1112
ENST00000430867 ICA1-009 protein_coding Homo_sapiens 0 593
ENST00000446305 ICA1-012 protein_coding Homo_sapiens 0 359
ENST00000455539 ICA1-005 nonsense_mediated_decay Homo_sapiens 0 1327
ENST00000490041 ICA1-016 retained_intron Homo_sapiens 0 372
ENST00000562640 CTD-2649C14.1-001 processed_pseudogene Homo_sapiens 0 291

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