C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cancer cell invasion
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038874 Scai-001 ENSMUSG00000035236 10090 - 2:39066214-39190730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038874 1.142±0.33 0.629±0.21 0.903±0.07 1.922±0.43 0.739±0.22 0.438±0.11 0.260±0.16 0.383±0.20 0.305±0.25 0.201±0.02 0.246±0.09 1.109±0.72 0.203±0.09 0.979±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075F CIL_00075F_0002 CGP 2:39016261-39190730
CIL_00075C CIL_00075C_0002 CGP 2:39066214-39226451

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016021 IEA integral component of membrane
GO:0030336 IGI negative regulation of cell migration
GO:0035024 IDA negative regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336505 SCAI-001 protein_coding Homo_sapiens 0 2863
ENST00000373549 SCAI-003 protein_coding Homo_sapiens 0 2368
ENST00000467917 SCAI-006 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000468569 SCAI-005 retained_intron Homo_sapiens 0 272
ENST00000477186 SCAI-004 nonsense_mediated_decay Homo_sapiens 0 1989
ENST00000487795 SCAI-002 processed_transcript Homo_sapiens 0 505
ENST00000494102 SCAI-007 nonsense_mediated_decay Homo_sapiens 0 425

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