C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cancer cell invasion
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373549 SCAI-003 ENSG00000173611 9606 - 9:124952788-125143496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLungMuscleENST00000373549
Transcript ID Bladder Brain Breast Heart Lung Muscle
ENST00000373549 1.366±0.00 8.250±0.00 2.476±0.00 0.653±0.00 3.128±0.00 0.723±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C7 CIL_0002C7_0002 CGP 9:124862130-124948492
CIL_00075F CIL_00075F_0001 CGP 9:124878357-125143506
CIL_00075C CIL_00075C_0001 CGP 9:124942608-125189939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IMP:IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016021 IEA integral component of membrane
GO:0030336 IMP negative regulation of cell migration
GO:0035024 ISS negative regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038874 Scai-001 protein_coding Mus_musculus 0 2368
ENSMUST00000147433 Scai-002 nonsense_mediated_decay Mus_musculus 0 2170
ENSMUST00000157038 Scai-003 retained_intron Mus_musculus 0 1173
ENSMUST00000131225 Scai-005 retained_intron Mus_musculus 0 462
ENSMUST00000142872 Scai-004 protein_coding Mus_musculus 0 257

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