C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cancer cell invasion
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336505 SCAI-001 ENSG00000173611 9606 - 9:124942608-125143496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungMuscleOvaryENST00000336505
Transcript ID Adipose Brain Colon Heart Liver Lung Muscle Ovary
ENST00000336505 0.297±0.00 2.811±0.17 0.218±0.00 0.335±0.11 1.182±0.00 0.939±0.67 0.627±0.00 0.630±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C7 CIL_0002C7_0002 CGP 9:124862130-124948492
CIL_00075F CIL_00075F_0001 CGP 9:124878357-125143506
CIL_00075C CIL_00075C_0001 CGP 9:124942608-125189939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IMP:IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016021 IEA integral component of membrane
GO:0030336 IMP negative regulation of cell migration
GO:0035024 ISS negative regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038874 Scai-001 protein_coding Mus_musculus 0 2863
ENSMUST00000147433 Scai-002 nonsense_mediated_decay Mus_musculus 0 2172
ENSMUST00000157038 Scai-003 retained_intron Mus_musculus 0 1430
ENSMUST00000131225 Scai-005 retained_intron Mus_musculus 0 462
ENSMUST00000142872 Scai-004 protein_coding Mus_musculus 0 259
ENSMUST00000147797 Nol9-003 processed_transcript Mus_musculus 0.0000000006 73
ENSMUST00000038014 Dnajc16-001 protein_coding Mus_musculus 0.00000003 68

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