C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmodulin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040440 Calm2-001 ENSMUSG00000036438 10090 - 17:87433412-87446935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040440 43.150±12.97 12.866±0.86 284.788±33.13 234.669±16.45 23.938±8.46 38.629±3.60 28.537±3.20 43.177±10.77 84.614±75.61 65.183±13.55 114.660±6.84 52.289±65.66 195.509±107.01 137.809±48.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014868 calm3a-201 protein_coding Danio_rerio 0.0000000000001 82
ENSDART00000021083 calm3b-201 protein_coding Danio_rerio 0.0000000008 69
ENST00000272298 CALM2-001 protein_coding Homo_sapiens 0 1755
ENST00000400429 CALM2P3-001 processed_pseudogene Homo_sapiens 0 531
ENST00000409563 CALM2-007 protein_coding Homo_sapiens 0 638
ENST00000422269 RP11-761B3.1-001 nonsense_mediated_decay Homo_sapiens 6e-35 152
ENST00000428512 CALM2P2-001 processed_pseudogene Homo_sapiens 0 525
ENST00000430810 CALM2P4-001 processed_pseudogene Homo_sapiens 0 499
ENST00000432899 CALM2-002 nonsense_mediated_decay Homo_sapiens 0 1175
ENST00000456319 CALM2-006 protein_coding Homo_sapiens 0 850
ENST00000460218 CALM2-003 retained_intron Homo_sapiens 0 1583
ENST00000482532 CALM2-004 retained_intron Homo_sapiens 0 856
ENST00000484408 CALM2-009 processed_transcript Homo_sapiens 0 582
ENST00000489742 CALM2-008 processed_transcript Homo_sapiens 0 398
ENST00000585658 CALM2P1-001 processed_pseudogene Homo_sapiens 0 455

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