C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521867 RP11-152C15.1-001 ENSG00000253173 9606 - 8:70103798-70104179 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMusclePlacentaTestisENST00000521867
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Placenta Testis
ENST00000521867 0.052±0.00 0.165±0.00 0.060±0.00 0.115±0.00 0.053±0.00 0.057±0.00 0.095±0.00 0.205±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ME CIL_0007ME_0001 UCNEbase 8:70008937-70182178
CIL_0003BO CIL_0003BO_0001 CGP 8:70051651-70403805

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173192 RP23-374K9.2-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000041045 H2afz-001 protein_coding Mus_musculus 0 529
ENSMUST00000138010 H2afz-002 retained_intron Mus_musculus 0 448
ENSMUST00000121866 Gm13007-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000173666 H2afz-006 processed_transcript Mus_musculus 0 361
ENSMUST00000173790 H2afz-007 protein_coding Mus_musculus 0 331
ENSMUST00000174561 H2afz-005 protein_coding Mus_musculus 0 278
ENSMUST00000172696 H2afz-008 nonsense_mediated_decay Mus_musculus 2e-26 122
ENSMUST00000125821 H2afz-003 retained_intron Mus_musculus 6e-26 121

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