C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Z pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394213 H2AFZP3-001 ENSG00000218502 9606 - 13:99215372-99215758 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryPlacentaTestisENST00000394213
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000394213 0.092±0.00 0.582±0.00 0.099±0.00 0.194±0.10 0.050±0.00 0.043±0.00 0.218±0.02 0.098±0.00 0.145±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000O4 CIL_0000O4_0001 CGP 13:98793487-99386434
CIL_0000O7 CIL_0000O7_0001 CGP 13:99200774-99386434

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173192 RP23-374K9.2-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000041045 H2afz-001 protein_coding Mus_musculus 0 521
ENSMUST00000138010 H2afz-002 retained_intron Mus_musculus 0 429
ENSMUST00000121866 Gm13007-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000173666 H2afz-006 processed_transcript Mus_musculus 0 355
ENSMUST00000172696 H2afz-008 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000173790 H2afz-007 protein_coding Mus_musculus 0 326
ENSMUST00000125821 H2afz-003 retained_intron Mus_musculus 0 303
ENSMUST00000174561 H2afz-005 protein_coding Mus_musculus 0 272
ENSMUST00000120206 Gm14687-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118569 Gm13930-001 processed_pseudogene Mus_musculus 0 241

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