C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Z
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296417 H2AFZ-001 ENSG00000164032 9606 - 4:99948088-99950388 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296417
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296417 36.669±0.00 49.551±0.00 2.986±0.00 41.600±14.29 22.405±4.98 53.925±22.78 11.713±7.86 24.213±14.00 17.644±3.47 43.548±33.25 13.381±5.31 73.712±29.30 89.923±7.46 85.303±1.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0005720 IDA nuclear heterochromatin
GO:0031490 IDA chromatin DNA binding
GO:0031492 IDA nucleosomal DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome
GO:0071392 IMP cellular response to estradiol stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041045 H2afz-001 protein_coding Mus_musculus 0 1411
ENSMUST00000174561 H2afz-005 protein_coding Mus_musculus 0 813
ENSMUST00000173192 RP23-374K9.2-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000138010 H2afz-002 retained_intron Mus_musculus 0 512
ENSMUST00000173666 H2afz-006 processed_transcript Mus_musculus 0 444
ENSMUST00000121866 Gm13007-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000172696 H2afz-008 nonsense_mediated_decay Mus_musculus 0 405
ENSMUST00000173790 H2afz-007 protein_coding Mus_musculus 0 398
ENSMUST00000125821 H2afz-003 retained_intron Mus_musculus 0 375
ENSMUST00000118569 Gm13930-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000120206 Gm14687-001 processed_pseudogene Mus_musculus 0 270

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