C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cylindromatosis (turban tumor syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043526 Cyld-201 ENSMUSG00000036712 10090 + 8:88697028-88751945 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverPlacentaTestisENSMUST00000043526
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Placenta Testis
ENSMUST00000043526 1.923±0.32 1.314±0.00 0.520±0.00 0.471±0.10 0.586±0.00 1.062±0.00 0.491±0.03 1.069±0.00 0.371±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0003PR CIL_0003PR_0002 CGP 8:88647315-88751945
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_00077S CIL_00077S_0002 CGP 8:88697028-89044162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IBA cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007346 IBA regulation of mitotic cell cycle
GO:0016579 IMP protein deubiquitination
GO:0032088 IBA negative regulation of NF-kappaB transcription factor activity
GO:0045581 IDA negative regulation of T cell differentiation
GO:0061578 IBA Lys63-specific deubiquitinase activity
GO:0070266 IGI necroptotic process
GO:0070536 IBA protein K63-linked deubiquitination
GO:1901026 IMP ripoptosome assembly involved in necroptotic process
GO:2001238 IBA positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 IBA regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311559 CYLD-003 protein_coding Homo_sapiens 0 4277
ENST00000398568 CYLD-005 protein_coding Homo_sapiens 0 3978
ENST00000427738 CYLD-010 protein_coding Homo_sapiens 0 4270
ENST00000562884 CYLD-015 protein_coding Homo_sapiens 0 344
ENST00000563629 CYLD-008 retained_intron Homo_sapiens 0 2180
ENST00000563976 CYLD-013 retained_intron Homo_sapiens 0 289
ENST00000564326 CYLD-006 protein_coding Homo_sapiens 0 3840
ENST00000566024 CYLD-014 protein_coding Homo_sapiens 0 204
ENST00000566206 CYLD-002 protein_coding Homo_sapiens 0 3452
ENST00000566679 CYLD-007 protein_coding Homo_sapiens 0 1236
ENST00000568704 CYLD-009 protein_coding Homo_sapiens 0 2194
ENST00000569418 CYLD-001 protein_coding Homo_sapiens 0 3976
ENST00000569681 CYLD-011 protein_coding Homo_sapiens 0 664
ENST00000569891 CYLD-004 retained_intron Homo_sapiens 0 2412

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