C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 10B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044673 Trmt10b-001 ENSMUSG00000035601 10090 + 4:45297127-45316131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044673 0.850±0.23 0.693±0.45 3.109±0.41 4.063±2.49 1.073±0.53 1.140±0.53 0.710±0.12 1.472±0.39 1.269±0.81 1.154±0.32 1.074±0.16 1.660±0.98 1.927±1.01 2.293±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0002 CGP 4:45184875-45316131
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TH CIL_0006TH_0002 CGP 4:45297127-45342732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297994 TRMT10B-001 protein_coding Homo_sapiens 0 833
ENST00000377753 TRMT10B-201 protein_coding Homo_sapiens 0 431
ENST00000377754 TRMT10B-002 protein_coding Homo_sapiens 0 708
ENST00000488673 TRMT10B-003 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000509577 TRMT10B-008 retained_intron Homo_sapiens 3e-31 139
ENST00000519377 RP11-790J24.2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000537016 TRMT10B-007 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000537911 TRMT10B-202 protein_coding Homo_sapiens 0 285
ENST00000538370 TRMT10B-004 nonsense_mediated_decay Homo_sapiens 4e-34 148
ENST00000540616 TRMT10B-005 nonsense_mediated_decay Homo_sapiens 0 231

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