C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 10 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488673 TRMT10B-003 ENSG00000165275 9606 + 9:37753817-37778022 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000488673
Transcript ID Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000488673 1.266±0.00 0.686±0.33 0.988±0.00 0.416±0.00 0.925±0.00 1.617±0.00 1.220±0.70 0.616±0.06 0.834±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0001 CGP 9:37651000-37778972
CIL_00081A CIL_00081A_0001 VISTA 9:37738698-38340102
CIL_0006TH CIL_0006TH_0001 CGP 9:37753803-37801437

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126972 Trmt10b-003 processed_transcript Mus_musculus 0 562
ENSMUST00000107800 Trmt10b-002 protein_coding Mus_musculus 0 562
ENSMUST00000044673 Trmt10b-001 protein_coding Mus_musculus 0 562
ENSMUST00000144781 Trmt10b-004 protein_coding Mus_musculus 0 270
ENSMUST00000141659 Trmt10b-005 processed_transcript Mus_musculus 0 261
ENSMUST00000142785 Trmt10b-007 processed_transcript Mus_musculus 0 246

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