C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4A (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355431 ARID4A-001 ENSG00000032219 9606 + 14:58298385-58373733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355431
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355431 1.872±0.00 2.450±0.00 2.018±1.28 2.186±0.09 0.798±0.67 2.081±0.06 1.682±1.06 1.106±0.08 0.305±0.06 2.301±0.37 0.846±0.52 2.495±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0001 CGP 14:58244831-58373887
CIL_0001K9 CIL_0001K9_0001 CGP 14:58298385-58408701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006349 IEA regulation of gene expression by genetic imprinting
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007283 IEA spermatogenesis
GO:0017053 IDA transcriptional repressor complex
GO:0034773 IEA histone H4-K20 trimethylation
GO:0036124 IEA histone H3-K9 trimethylation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048821 IEA erythrocyte development
GO:0080182 IEA histone H3-K4 trimethylation
GO:0097368 IEA establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046305 Arid4a-001 protein_coding Mus_musculus 0 4257
ENSMUST00000135709 Arid4a-004 protein_coding Mus_musculus 0 1474
ENSMUST00000125125 Arid4a-003 protein_coding Mus_musculus 0 1146
ENSMUST00000134718 Arid4a-002 processed_transcript Mus_musculus 0 1118
ENSDART00000128291 arid4a-201 protein_coding Danio_rerio 4e-24 119
ENSDART00000151847 arid4a-003 protein_coding Danio_rerio 4e-24 119

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