C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048112 Sgsm1-001 ENSMUSG00000042216 10090 - 5:113243220-113310786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000048112
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000048112 0.426±0.00 1.835±0.59 13.471±6.26 0.385±0.17 2.123±0.45 0.109±0.03 0.326±0.04 0.644±0.19 0.061±0.01 1.031±0.39 0.181±0.02 0.241±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0002 VISTA 5:112851952-113454228

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060946 SGSM1 (2 of 2)-201 protein_coding Danio_rerio 0 597
ENSDART00000142278 SGSM1 (2 of 2)-001 protein_coding Danio_rerio 0 597
ENSDART00000047841 SGSM1 (1 of 2)-201 protein_coding Danio_rerio 0 520
ENST00000400358 SGSM1-001 protein_coding Homo_sapiens 0 3609
ENST00000400359 SGSM1-004 protein_coding Homo_sapiens 0 2146
ENST00000473458 SGSM1-002 retained_intron Homo_sapiens 0 1921
ENST00000480523 SGSM1-003 retained_intron Homo_sapiens 0 3531
ENST00000610372 SGSM1-201 protein_coding Homo_sapiens 0 1469

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