C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 13B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048646 Vps13b-201 ENSMUSG00000037646 10090 + 15:35371546-35931228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000048646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048646 5.963±2.26 4.532±0.63 3.726±0.00 2.690±0.26 3.435±0.22 5.015±1.29 4.585±0.35 2.906±0.32 4.305±0.80 4.210±1.30 2.605±0.85 4.090±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090P CIL_00090P_0002 VISTA 15:35232217-35834804
CIL_00026G CIL_00026G_0002 CGP 15:35296098-35931228
CIL_0006JN CIL_0006JN_0002 CGP 15:35371546-35938246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355155 VPS13B-004 protein_coding Homo_sapiens 0 2985
ENST00000357162 VPS13B-001 protein_coding Homo_sapiens 0 13290
ENST00000358544 VPS13B-002 protein_coding Homo_sapiens 0 8436
ENST00000441350 VPS13B-006 protein_coding Homo_sapiens 0 1487
ENST00000493587 VPS13B-005 retained_intron Homo_sapiens 0 568
ENST00000496144 VPS13B-003 nonsense_mediated_decay Homo_sapiens 0 4850
ENST00000518569 VPS13B-012 processed_transcript Homo_sapiens 0 436
ENST00000521559 VPS13B-009 protein_coding Homo_sapiens 0 483
ENST00000521932 VPS13B-007 processed_transcript Homo_sapiens 0 492
ENST00000524330 VPS13B-013 processed_transcript Homo_sapiens 3e-16 88
ENST00000570978 RP11-636N17.1-001 processed_pseudogene Homo_sapiens 0 220

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