C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222728 HOXA6-001 ENSG00000106006 9606 - 7:27145396-27147774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryENST00000222728
Transcript ID Brain Lung Ovary
ENST00000222728 0.136±0.00 2.277±0.00 1.559±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PC CIL_0003PC_0001 CGP 7:27141052-27150603
CIL_0003P9 CIL_0003P9_0001 CGP 7:27145396-27157936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 0 1127
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 0 239
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 0 239
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 0 239
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 0 220
ENSMUST00000001711 Hoxc6-001 protein_coding Mus_musculus 0 215
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 8e-39 165
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 3e-33 147
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 3e-33 147
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 3e-33 147
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 3e-33 147
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 3e-33 147
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 3e-33 147
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 3e-33 147
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 1e-27 128
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 1e-27 128
ENSMUST00000151596 Hoxb7-002 processed_transcript Mus_musculus 4e-27 126
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 4e-17 94
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 4e-17 94
ENSMUST00000100523 Hoxb2-001 protein_coding Mus_musculus 0.000000000000002 88
ENSMUST00000182030 Hoxb2-002 retained_intron Mus_musculus 0.000000000000002 88
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.00000000000008 82

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