C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429713 SYNPO2-003 ENSG00000172403 9606 + 4:118888855-119035835 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverMusclePlacentaTestisENST00000429713
Transcript ID Adipose Brain Heart Liver Muscle Placenta Testis
ENST00000429713 12.260±0.00 1.176±0.43 8.745±3.65 141.646±0.00 238.601±192.40 3.794±0.00 5.667±3.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005925 IDA focal adhesion
GO:0015629 IDA actin cytoskeleton
GO:0030018 ISS Z disc
GO:0051371 ISS muscle alpha-actinin binding
GO:0071889 ISS 14-3-3 protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051443 Synpo2-001 protein_coding Mus_musculus 0 3092
ENSMUST00000106426 Synpo2-005 protein_coding Mus_musculus 0 2865
ENSMUST00000106427 Synpo2-004 protein_coding Mus_musculus 0 2702
ENSMUST00000184590 Synpo2-006 processed_transcript Mus_musculus 0 547
ENSMUST00000184403 Synpo2-002 processed_transcript Mus_musculus 9.80909e-45 187
ENSMUST00000139160 Synpo2-003 protein_coding Mus_musculus 2e-27 130

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