C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504178 SYNPO2-004 ENSG00000172403 9606 + 4:119023471-119061247 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungOvaryTestisENST00000504178
Transcript ID Adrenal Brain Breast Heart Kidney Lung Ovary Testis
ENST00000504178 14.875±0.00 1.345±0.00 3.707±0.00 3.099±0.00 0.791±0.00 2.853±0.00 2.273±0.00 7.553±6.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106427 Synpo2-004 protein_coding Mus_musculus 0 2874
ENSMUST00000051443 Synpo2-001 protein_coding Mus_musculus 0 2488
ENSMUST00000106426 Synpo2-005 protein_coding Mus_musculus 0 2488
ENSMUST00000184590 Synpo2-006 processed_transcript Mus_musculus 0 387
ENSMUST00000139160 Synpo2-003 protein_coding Mus_musculus 2e-27 130
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00001 58
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0.0001 55

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