C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: abl-interactor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052332 Abi2-001 ENSMUSG00000026782 10090 + 1:60409619-60481158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052332 3.597±1.74 1.179±0.45 5.632±0.78 12.274±1.62 1.578±0.32 0.734±0.33 1.479±0.21 2.550±0.40 1.040±0.70 2.608±1.30 0.416±0.17 2.834±1.26 3.187±1.82 2.570±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JP CIL_0000JP_0003 CGP 1:60343323-60481158
CIL_0000JQ CIL_0000JQ_0003 CGP 1:60409619-60567104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 ISA cytosol
GO:0005856 IEA cytoskeleton
GO:0005913 IDA cell-cell adherens junction
GO:0007611 IMP learning or memory
GO:0008154 IEA actin polymerization or depolymerization
GO:0016358 IMP dendrite development
GO:0016477 IMP cell migration
GO:0018108 ISA peptidyl-tyrosine phosphorylation
GO:0030425 IDA dendrite
GO:0043010 IMP camera-type eye development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065471 abi2b-001 protein_coding Danio_rerio 0 448
ENSDART00000081040 abi2a-001 protein_coding Danio_rerio 0 446
ENSDART00000151564 abi2b-003 protein_coding Danio_rerio 0 433
ENSDART00000151037 abi2b-002 protein_coding Danio_rerio 0 368
ENSDART00000151395 abi2b-004 protein_coding Danio_rerio 0 331
ENSDART00000151222 abi2b-005 protein_coding Danio_rerio 0 320
ENST00000261016 ABI2-201 protein_coding Homo_sapiens 0 1903
ENST00000261017 ABI2-002 protein_coding Homo_sapiens 0 1555
ENST00000261018 ABI2-202 protein_coding Homo_sapiens 0 1238
ENST00000295851 ABI2-001 protein_coding Homo_sapiens 0 1238
ENST00000376135 ABI2-015 processed_transcript Homo_sapiens 0 743
ENST00000411547 ABI2-016 processed_transcript Homo_sapiens 0 292
ENST00000413635 ABI2-011 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000416001 ABI2-003 nonsense_mediated_decay Homo_sapiens 0 850
ENST00000416396 ABI2-021 processed_transcript Homo_sapiens 0 302
ENST00000417864 ABI2-006 protein_coding Homo_sapiens 0 1238
ENST00000422511 ABI2-007 protein_coding Homo_sapiens 0 1238
ENST00000422719 ABI2-017 processed_transcript Homo_sapiens 0 501
ENST00000424558 ABI2-005 protein_coding Homo_sapiens 0 1315
ENST00000425253 ABI2-023 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000430418 ABI2-004 protein_coding Homo_sapiens 0 880
ENST00000430574 ABI2-019 processed_transcript Homo_sapiens 0 965
ENST00000431886 ABI2-013 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000441061 ABI2-008 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000444584 ABI2-014 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000447762 ABI2-024 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000451591 ABI2-018 protein_coding Homo_sapiens 0 894
ENST00000454023 ABI2-020 protein_coding Homo_sapiens 0 1345
ENST00000457812 RAPH1-005 protein_coding Homo_sapiens 0 268
ENST00000464761 ABI2-022 processed_transcript Homo_sapiens 0 388
ENST00000494215 ABI2-012 retained_intron Homo_sapiens 0 477

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