C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053440 Ccdc40-002 ENSMUSG00000039963 10090 + 11:119229129-119262900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053440
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053440 0.038±0.00 0.029±0.00 0.842±0.28 0.022±0.01 0.028±0.00 0.092±0.06 0.030±0.00 0.011±0.00 0.548±0.00 0.013±0.00 4.419±4.04 0.206±0.14 28.267±31.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0002 CGP 11:119143045-119265236
CIL_00003V CIL_00003V_0002 CGP 11:119228572-119285454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003341 IMP cilium movement
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005929 IDA cilium
GO:0030324 IMP lung development
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397545 CCDC40-001 protein_coding Homo_sapiens 0 1495
ENST00000572253 CCDC40-005 retained_intron Homo_sapiens 0 307
ENST00000574799 CCDC40-004 retained_intron Homo_sapiens 0 1495
ENST00000575431 CCDC40-013 retained_intron Homo_sapiens 0 392

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