C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054538 Arhgef39-001 ENSMUSG00000051517 10090 - 4:43496142-43499695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054538
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054538 0.930±0.54 4.594±1.38 2.707±2.93 0.427±0.14 7.256±0.61 0.190±0.02 2.906±0.62 7.583±7.71 0.589±0.24 0.105±0.02 4.768±1.54 3.865±2.49 4.101±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072N CIL_00072N_0002 CGP 4:43492900-43499695
CIL_00072O CIL_00072O_0002 CGP 4:43496142-43513729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005886 ISS plasma membrane
GO:0030335 ISS positive regulation of cell migration
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378387 ARHGEF39-001 protein_coding Homo_sapiens 0 1086
ENST00000468876 ARHGEF39-006 processed_transcript Homo_sapiens 0 385
ENST00000475323 ARHGEF39-003 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000490638 ARHGEF39-004 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000490970 ARHGEF39-002 processed_transcript Homo_sapiens 0 329

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