C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00072O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137135-ENSG00000107159 CGP 9606 9:35658875-35681159
GeneTranscriptPositionBiotype
ENSG00000137135 (ARHGEF39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENST00000378387 (ARHGEF39-001) 35659344-35665287 protein_coding
ENST00000468876 (ARHGEF39-006) 35662967-35664828 processed_transcript
ENST00000475323 (ARHGEF39-003) 35658877-35665192 nonsense_mediated_decay
ENST00000488918 (ARHGEF39-005) 35661838-35662644 processed_transcript
ENST00000490638 (ARHGEF39-004) 35658875-35675866 nonsense_mediated_decay
ENST00000490970 (ARHGEF39-002) 35661519-35665187 processed_transcript
ENSG00000159884 (CCDC107)
coiled-coil domain containing 107 		ENST00000327351 (CCDC107-003) 35658317-35661177 protein_coding
ENST00000378406 (CCDC107-004) 35658314-35661187 protein_coding
ENST00000378407 (CCDC107-002) 35658304-35661186 protein_coding
ENST00000378409 (CCDC107-201) 35658290-35661499 protein_coding
ENST00000421582 (CCDC107-005) 35658317-35661403 protein_coding
ENST00000426546 (CCDC107-001) 35658314-35661511 protein_coding
ENSG00000243136 (RN7SL22P)
RNA, 7SL, cytoplasmic 22, pseudogene 		ENST00000471800 (RN7SL22P-201) 35671776-35672044 misc_RNA
CIL_00072O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051517-ENSMUSG00000028463 CGP 10090 4:43496142-43513729
GeneTranscriptPositionBiotype
ENSMUSG00000028463 (Car9)
carbonic anhydrase 9 		ENSMUST00000030183 (Car9-001) 43506966-43513729 protein_coding
ENSMUST00000124114 (Car9-002) 43507024-43513729 processed_transcript
ENSMUST00000126750 (Car9-005) 43508543-43509035 processed_transcript
ENSMUST00000128232 (Car9-004) 43507877-43508974 processed_transcript
ENSMUST00000129996 (Car9-006) 43508937-43512455 processed_transcript
ENSMUST00000138073 (Car9-003) 43507312-43513058 protein_coding
ENSMUST00000154251 (Car9-007) 43512132-43512942 processed_transcript
ENSMUSG00000051517 (Arhgef39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENSMUST00000054538 (Arhgef39-001) 43496142-43499695 protein_coding
ENSMUST00000125834 (Arhgef39-004) 43496524-43499661 processed_transcript
ENSMUST00000128754 (Arhgef39-002) 43496146-43499619 processed_transcript
ENSMUST00000129378 (Arhgef39-009) 43496148-43497213 processed_transcript
ENSMUST00000136005 (Arhgef39-010) 43496821-43499608 protein_coding
ENSMUST00000146781 (Arhgef39-005) 43497732-43499611 processed_transcript
ENSMUST00000147124 (Arhgef39-007) 43497261-43499075 processed_transcript
ENSMUST00000152134 (Arhgef39-008) 43496142-43497234 protein_coding
ENSMUST00000154905 (Arhgef39-006) 43497220-43499115 processed_transcript
ENSMUST00000156058 (Arhgef39-003) 43499147-43499661 processed_transcript
ENSMUSG00000087142 (Gm12454)
predicted gene 12454 		ENSMUST00000139119 (Gm12454-001) 43505657-43508747 antisense
ENSMUST00000149817 (Gm12454-002) 43504428-43508724 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072O_0001ENSG00000137135ENST00000378387ENST00000468876ENST00000475323ENST00000488918ENST00000490638ENST00000490970ENSG00000159884ENST00000327351ENST00000378406ENST00000378407ENST00000378409ENST00000421582ENST00000426546ENSG00000243136ENST00000471800CIL_00072O_0002ENSMUSG00000028463ENSMUST00000030183ENSMUST00000124114ENSMUST00000126750ENSMUST00000128232ENSMUST00000129996ENSMUST00000138073ENSMUST00000154251ENSMUSG00000051517ENSMUST00000054538ENSMUST00000125834ENSMUST00000128754ENSMUST00000129378ENSMUST00000136005ENSMUST00000146781ENSMUST00000147124ENSMUST00000152134ENSMUST00000154905ENSMUST00000156058ENSMUSG00000087142ENSMUST00000139119ENSMUST00000149817
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072O_0001ENSG00000137135ENST00000378387ENST00000475323ENSG00000159884ENST00000327351ENST00000378409ENSG00000243136ENST00000471800CIL_00072O_0002ENSMUSG00000028463ENSMUST00000030183ENSMUST00000124114ENSMUST00000129996ENSMUST00000138073ENSMUST00000154251ENSMUSG00000051517ENSMUST00000054538ENSMUST00000125834ENSMUST00000128754ENSMUST00000129378ENSMUST00000146781ENSMUST00000147124ENSMUST00000152134ENSMUST00000154905ENSMUSG00000087142ENSMUST00000139119ENSMUST00000149817
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137135 ENST00000378387 0.948±0.00 0.735±0.00 N/A N/A N/A 0.257±0.00 N/A N/A N/A 0.049±0.00 N/A 2.794±2.18 0.947±0.00 1.361±0.05
ENST00000468876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475323 3.997±0.00 3.491±0.00 0.020±0.00 1.348±0.65 11.515±0.00 10.231±0.00 3.188±0.00 1.642±1.58 2.247±0.00 4.548±0.00 3.132±2.57 3.740±0.51 3.095±1.05 3.489±0.81
ENST00000488918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159884 ENST00000327351 10.776±0.00 7.007±0.00 0.299±0.00 2.981±0.00 17.999±16.18 N/A 6.478±0.00 3.221±2.15 3.461±1.66 12.875±0.00 1.449±0.00 3.790±2.76 4.762±0.00 11.034±0.00
ENST00000378406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378409 N/A N/A N/A N/A 0.757±0.00 1.198±0.00 1.407±1.13 0.124±0.00 2.517±0.00 0.552±0.00 7.295±0.00 5.209±0.48 6.558±1.60 4.137±0.00
ENST00000421582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243136 ENST00000471800 N/A 0.311±0.00 N/A 0.532±0.00 0.128±0.00 N/A 0.056±0.00 0.252±0.00 N/A N/A N/A N/A N/A 0.182±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028463 ENSMUST00000030183 0.476±0.00 0.119±0.00 1.993±0.33 0.088±0.01 0.355±0.19 28.670±1.28 N/A 1.537±0.84 0.505±0.29 0.616±0.34 0.693±0.13 2.483±0.70 0.776±0.31 0.082±0.01
ENSMUST00000124114 0.778±0.00 0.399±0.21 N/A N/A 0.346±0.12 N/A 0.096±0.00 N/A 0.112±0.05 N/A 0.292±0.00 1.342±0.43 N/A 0.022±0.00
ENSMUST00000126750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129996 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138073 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.060±0.00 N/A 0.441±0.00 2.476±0.00 N/A 0.019±0.00
ENSMUST00000154251 N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051517 ENSMUST00000054538 0.930±0.54 N/A 4.594±1.38 2.707±2.93 0.427±0.14 7.256±0.61 0.190±0.02 2.906±0.62 7.583±7.71 0.589±0.24 0.105±0.02 4.768±1.54 3.865±2.49 4.101±0.45
ENSMUST00000125834 1.009±0.75 0.882±0.32 2.741±1.15 4.272±2.66 0.385±0.15 11.138±2.75 0.219±0.05 3.037±1.04 5.970±6.12 0.663±0.39 0.171±0.00 4.650±1.78 1.534±1.02 2.708±1.27
ENSMUST00000128754 0.211±0.18 N/A 1.172±0.43 3.197±0.00 0.182±0.00 3.953±0.66 0.098±0.00 1.028±0.34 2.207±2.19 N/A 0.041±0.00 1.401±0.98 0.860±0.04 N/A
ENSMUST00000129378 N/A N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A 0.070±0.00 2.034±0.40 0.477±0.00 N/A
ENSMUST00000136005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146781 N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.04 N/A 0.067±0.03 1.882±0.00 1.741±0.00 N/A
ENSMUST00000147124 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A 0.114±0.04 N/A N/A N/A
ENSMUST00000152134 N/A N/A N/A 0.067±0.00 N/A N/A 0.147±0.00 N/A N/A N/A 0.103±0.02 2.613±0.77 2.129±1.16 1.253±0.00
ENSMUST00000154905 N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A 0.648±0.00
ENSMUST00000156058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087142 ENSMUST00000139119 0.448±0.14 N/A 4.968±0.83 0.087±0.05 0.284±0.00 N/A 0.194±0.05 N/A 0.328±0.20 0.655±0.11 0.230±0.01 3.750±0.61 1.228±0.55 0.275±0.31
ENSMUST00000149817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.715±0.00 N/A

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