C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00072N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159884-ENSG00000137135 CGP 9606 9:35658290-35675866
GeneTranscriptPositionBiotype
ENSG00000137135 (ARHGEF39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENST00000378387 (ARHGEF39-001) 35659344-35665287 protein_coding
ENST00000468876 (ARHGEF39-006) 35662967-35664828 processed_transcript
ENST00000475323 (ARHGEF39-003) 35658877-35665192 nonsense_mediated_decay
ENST00000488918 (ARHGEF39-005) 35661838-35662644 processed_transcript
ENST00000490638 (ARHGEF39-004) 35658875-35675866 nonsense_mediated_decay
ENST00000490970 (ARHGEF39-002) 35661519-35665187 processed_transcript
ENSG00000159884 (CCDC107)
coiled-coil domain containing 107 		ENST00000327351 (CCDC107-003) 35658317-35661177 protein_coding
ENST00000378406 (CCDC107-004) 35658314-35661187 protein_coding
ENST00000378407 (CCDC107-002) 35658304-35661186 protein_coding
ENST00000378409 (CCDC107-201) 35658290-35661499 protein_coding
ENST00000421582 (CCDC107-005) 35658317-35661403 protein_coding
ENST00000426546 (CCDC107-001) 35658314-35661511 protein_coding
ENSG00000243136 (RN7SL22P)
RNA, 7SL, cytoplasmic 22, pseudogene 		ENST00000471800 (RN7SL22P-201) 35671776-35672044 misc_RNA
CIL_00072N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028461-ENSMUSG00000051517 CGP 10090 4:43492900-43499695
GeneTranscriptPositionBiotype
ENSMUSG00000028461 (Ccdc107)
coiled-coil domain containing 107 		ENSMUST00000030181 (Ccdc107-001) 43493362-43495921 protein_coding
ENSMUST00000107922 (Ccdc107-002) 43493389-43495921 protein_coding
ENSMUST00000127324 (Ccdc107-003) 43493377-43493810 processed_transcript
ENSMUST00000137113 (Ccdc107-005) 43493417-43495871 processed_transcript
ENSMUST00000140005 (Ccdc107-006) 43493417-43495864 processed_transcript
ENSMUST00000143073 (Ccdc107-004) 43492900-43494205 processed_transcript
ENSMUSG00000051517 (Arhgef39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENSMUST00000054538 (Arhgef39-001) 43496142-43499695 protein_coding
ENSMUST00000125834 (Arhgef39-004) 43496524-43499661 processed_transcript
ENSMUST00000128754 (Arhgef39-002) 43496146-43499619 processed_transcript
ENSMUST00000129378 (Arhgef39-009) 43496148-43497213 processed_transcript
ENSMUST00000136005 (Arhgef39-010) 43496821-43499608 protein_coding
ENSMUST00000146781 (Arhgef39-005) 43497732-43499611 processed_transcript
ENSMUST00000147124 (Arhgef39-007) 43497261-43499075 processed_transcript
ENSMUST00000152134 (Arhgef39-008) 43496142-43497234 protein_coding
ENSMUST00000154905 (Arhgef39-006) 43497220-43499115 processed_transcript
ENSMUST00000156058 (Arhgef39-003) 43499147-43499661 processed_transcript
ENSMUSG00000088088 (Rmrp)
RNA component of mitochondrial RNAase P 		ENSMUST00000157463 (Rmrp-201) 43492788-43493058 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072N_0001ENSG00000137135ENST00000378387ENST00000468876ENST00000475323ENST00000488918ENST00000490638ENST00000490970ENSG00000159884ENST00000327351ENST00000378406ENST00000378407ENST00000378409ENST00000421582ENST00000426546ENSG00000243136ENST00000471800CIL_00072N_0002ENSMUSG00000028461ENSMUST00000030181ENSMUST00000107922ENSMUST00000127324ENSMUST00000137113ENSMUST00000140005ENSMUST00000143073ENSMUSG00000051517ENSMUST00000054538ENSMUST00000125834ENSMUST00000128754ENSMUST00000129378ENSMUST00000136005ENSMUST00000146781ENSMUST00000147124ENSMUST00000152134ENSMUST00000154905ENSMUST00000156058ENSMUSG00000088088ENSMUST00000157463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072N_0001ENSG00000137135ENST00000378387ENST00000475323ENSG00000159884ENST00000327351ENST00000378409ENSG00000243136ENST00000471800CIL_00072N_0002ENSMUSG00000028461ENSMUST00000030181ENSMUST00000107922ENSMUST00000127324ENSMUSG00000051517ENSMUST00000054538ENSMUST00000125834ENSMUST00000128754ENSMUST00000129378ENSMUST00000146781ENSMUST00000147124ENSMUST00000152134ENSMUST00000154905ENSMUSG00000088088ENSMUST00000157463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137135 ENST00000378387 0.948±0.00 0.735±0.00 N/A N/A N/A 0.257±0.00 N/A N/A N/A 0.049±0.00 N/A 2.794±2.18 0.947±0.00 1.361±0.05
ENST00000468876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475323 3.997±0.00 3.491±0.00 0.020±0.00 1.348±0.65 11.515±0.00 10.231±0.00 3.188±0.00 1.642±1.58 2.247±0.00 4.548±0.00 3.132±2.57 3.740±0.51 3.095±1.05 3.489±0.81
ENST00000488918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159884 ENST00000327351 10.776±0.00 7.007±0.00 0.299±0.00 2.981±0.00 17.999±16.18 N/A 6.478±0.00 3.221±2.15 3.461±1.66 12.875±0.00 1.449±0.00 3.790±2.76 4.762±0.00 11.034±0.00
ENST00000378406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378409 N/A N/A N/A N/A 0.757±0.00 1.198±0.00 1.407±1.13 0.124±0.00 2.517±0.00 0.552±0.00 7.295±0.00 5.209±0.48 6.558±1.60 4.137±0.00
ENST00000421582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243136 ENST00000471800 N/A 0.311±0.00 N/A 0.532±0.00 0.128±0.00 N/A 0.056±0.00 0.252±0.00 N/A N/A N/A N/A N/A 0.182±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028461 ENSMUST00000030181 6.190±0.34 16.274±3.43 48.543±2.02 16.403±9.08 N/A 19.594±2.26 5.551±0.90 54.686±5.46 19.165±8.50 9.739±0.12 19.469±1.74 27.091±5.43 26.292±12.22 4.752±0.00
ENSMUST00000107922 N/A N/A 15.344±3.86 N/A 1.437±0.00 N/A N/A N/A 3.232±0.00 N/A 3.154±0.00 9.918±6.29 4.246±0.00 0.971±0.00
ENSMUST00000127324 68.746±39.29 152.237±33.79 78.694±12.09 33.921±10.13 71.714±28.92 184.240±58.56 20.960±4.88 226.565±74.02 66.057±37.02 80.313±19.45 N/A 154.422±55.59 17.388±0.00 N/A
ENSMUST00000137113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051517 ENSMUST00000054538 0.930±0.54 N/A 4.594±1.38 2.707±2.93 0.427±0.14 7.256±0.61 0.190±0.02 2.906±0.62 7.583±7.71 0.589±0.24 0.105±0.02 4.768±1.54 3.865±2.49 4.101±0.45
ENSMUST00000125834 1.009±0.75 0.882±0.32 2.741±1.15 4.272±2.66 0.385±0.15 11.138±2.75 0.219±0.05 3.037±1.04 5.970±6.12 0.663±0.39 0.171±0.00 4.650±1.78 1.534±1.02 2.708±1.27
ENSMUST00000128754 0.211±0.18 N/A 1.172±0.43 3.197±0.00 0.182±0.00 3.953±0.66 0.098±0.00 1.028±0.34 2.207±2.19 N/A 0.041±0.00 1.401±0.98 0.860±0.04 N/A
ENSMUST00000129378 N/A N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A 0.070±0.00 2.034±0.40 0.477±0.00 N/A
ENSMUST00000136005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146781 N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.04 N/A 0.067±0.03 1.882±0.00 1.741±0.00 N/A
ENSMUST00000147124 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A 0.114±0.04 N/A N/A N/A
ENSMUST00000152134 N/A N/A N/A 0.067±0.00 N/A N/A 0.147±0.00 N/A N/A N/A 0.103±0.02 2.613±0.77 2.129±1.16 1.253±0.00
ENSMUST00000154905 N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A 0.648±0.00
ENSMUST00000156058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088088 ENSMUST00000157463 1036.260±0.00 151.594±21.95 117.425±16.80 326.685±11.58 362.012±0.00 515.535±212.41 47.395±0.00 328.063±139.76 108.242±45.91 N/A N/A 1686.340±863.30 203.661±93.96 366.479±178.79

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