C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239144 HOXB8-001 ENSG00000120068 9606 - 17:48612346-48614939 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000239144
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000239144 0.135±0.00 0.373±0.00 1.443±0.00 0.349±0.00 0.014±0.00 5.150±0.00 0.224±0.00 0.665±0.35 0.284±0.13 2.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007625 IEA grooming behavior
GO:0008344 IEA adult locomotory behavior
GO:0009952 IEA anterior/posterior pattern specification
GO:0019233 IEA sensory perception of pain
GO:0021516 IEA dorsal spinal cord development
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052650 Hoxb8-001 protein_coding Mus_musculus 0 2409
ENSMUST00000168043 Hoxb8-201 protein_coding Mus_musculus 0 1478
ENSMUST00000125410 Hoxb8-002 protein_coding Mus_musculus 0 1000
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 1e-34 152
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 1e-34 152
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.0000000000002 82
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0.0000000000002 82
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0.0000000000002 82
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.0000000000002 82
ENSMUST00000057054 Meox1-001 protein_coding Mus_musculus 0.00000000009 73

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