C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498634 HOXB8-003 ENSG00000120068 9606 - 17:48611377-48613479 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonPlacentaENST00000498634
Transcript ID Adrenal Colon Placenta
ENST00000498634 0.274±0.00 2.155±0.00 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168043 Hoxb8-201 protein_coding Mus_musculus 0 401
ENSMUST00000052650 Hoxb8-001 protein_coding Mus_musculus 0 401
ENSMUST00000125410 Hoxb8-002 protein_coding Mus_musculus 0 200
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 1e-28 130
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 1e-28 130
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.00000000000004 82
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0.00000000000004 82
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0.00000000000004 82
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.00000000000004 82
ENSMUST00000057054 Meox1-001 protein_coding Mus_musculus 0.00000000002 73

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