C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057190 Pabpc6-201 ENSMUSG00000046173 10090 - 17:9666497-9669704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLungOvaryTestisENSMUST00000057190
Transcript ID Adipose Brain Heart Kidney Lung Ovary Testis
ENSMUST00000057190 0.011±0.00 0.006±0.00 0.020±0.00 0.019±0.01 0.015±0.00 0.022±0.02 106.694±18.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L7 CIL_0008L7_0002 VISTA 17:9586737-10190587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008143 IEA poly(A) binding
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281589 PABPC3-001 protein_coding Homo_sapiens 0 845
ENST00000318607 PABPC1-001 protein_coding Homo_sapiens 0 979
ENST00000518716 PABPC1-022 retained_intron Homo_sapiens 0 337
ENST00000519004 PABPC1-002 protein_coding Homo_sapiens 0 813
ENST00000519100 PABPC1-012 protein_coding Homo_sapiens 0 496
ENST00000519596 PABPC1-013 processed_transcript Homo_sapiens 0 418
ENST00000519622 PABPC1-024 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000522387 PABPC1-003 protein_coding Homo_sapiens 0 778
ENST00000523636 PABPC1-014 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000539977 PABPC1P4-001 processed_pseudogene Homo_sapiens 0 763
ENST00000610907 PABPC1-201 protein_coding Homo_sapiens 0 894

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