C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281589 PABPC3-001 ENSG00000151846 9606 + 13:25095868-25099254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281589
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281589 0.176±0.00 0.108±0.00 0.048±0.02 0.090±0.00 0.101±0.00 0.015±0.00 0.056±0.00 0.008±0.01 0.023±0.00 0.006±0.00 0.089±0.10 0.049±0.04 38.635±27.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005737 NAS cytoplasm
GO:0008143 IDA poly(A) binding
GO:0016071 NAS mRNA metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 3068
ENSMUST00000063219 Pabpc2-001 protein_coding Mus_musculus 0 1415
ENSMUST00000162696 Gm16580-001 processed_pseudogene Mus_musculus 0 1229
ENSMUST00000156793 Pabpc1-006 processed_transcript Mus_musculus 0 965
ENSMUST00000057190 Pabpc6-201 protein_coding Mus_musculus 0 845
ENSMUST00000146327 Pabpc1-002 processed_transcript Mus_musculus 0 817
ENSMUST00000146577 Pabpc1-003 processed_transcript Mus_musculus 0 689
ENSMUST00000155116 Pabpc1-007 protein_coding Mus_musculus 0 464
ENSMUST00000142357 Pabpc1-005 processed_transcript Mus_musculus 0 398
ENSMUST00000147116 Pabpc1-004 processed_transcript Mus_musculus 0 398

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