C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057209 Sgsm1-004 ENSMUSG00000042216 10090 - 5:113243229-113280601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057209 0.537±0.25 0.309±0.00 0.767±0.13 2.907±0.00 0.669±0.44 2.371±0.86 0.053±0.02 0.223±0.00 1.220±0.59 0.421±0.15 0.060±0.01 1.430±0.91 1.598±0.59 0.223±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0002 VISTA 5:112851952-113454228

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060946 SGSM1 (2 of 2)-201 protein_coding Danio_rerio 0 597
ENSDART00000142278 SGSM1 (2 of 2)-001 protein_coding Danio_rerio 0 597
ENSDART00000047841 SGSM1 (1 of 2)-201 protein_coding Danio_rerio 0 520
ENST00000400358 SGSM1-001 protein_coding Homo_sapiens 0 2531
ENST00000400359 SGSM1-004 protein_coding Homo_sapiens 0 2146
ENST00000473458 SGSM1-002 retained_intron Homo_sapiens 0 1406
ENST00000480523 SGSM1-003 retained_intron Homo_sapiens 0 2531
ENST00000610372 SGSM1-201 protein_coding Homo_sapiens 0 1406

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