C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | xeroderma pigmentosum, complementation group A | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000058232  |
Xpa-002 |
ENSMUSG00000028329 |
10090 | - |
4:46155347-46196311  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009AQ | CIL_0009AQ_0002 | VISTA | 4:46052102-46653592 |
| CIL_000853 | CIL_000853_0002 | VISTA | 4:46066953-46671362 |
| CIL_0009AR | CIL_0009AR_0002 | VISTA | 4:46066953-46668597 |
| CIL_0002JD | CIL_0002JD_0002 | CGP | 4:46114746-46172403 |
| CIL_00029T | CIL_00029T_0002 | CGP | 4:46138613-46196311 |
| CIL_00029U | CIL_00029U_0002 | CGP | 4:46155347-46346412 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003684 | IEA | damaged DNA binding |
| GO:0005634 | IDA | nucleus |
| GO:0006281 | IMP | DNA repair |
| GO:0006289 | IMP | nucleotide-excision repair |
| GO:0006979 | IMP | response to oxidative stress |
| GO:0008630 | IMP | intrinsic apoptotic signaling pathway in response to DNA damage |
| GO:0009411 | IMP | response to UV |
| GO:0009636 | IMP | response to toxic substance |
| GO:0035264 | IGI | multicellular organism growth |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000375128
|
XPA-001 | protein_coding | Homo_sapiens | 0 | 580 |
|
ENST00000462523
|
XPA-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 582 |
|
ENST00000496104
|
XPA-002 | processed_transcript | Homo_sapiens | 0 | 239 |
