C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: xeroderma pigmentosum, complementation group A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028329 Xpa 10090 - 4:46155347-46196311 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030013 Xpa-001 46175222-46196311 protein_coding
  ENSMUST00000058232 Xpa-002 46155347-46196311 protein_coding
  ENSMUST00000130051 Xpa-006 46184412-46186594 processed_transcript
  ENSMUST00000132358 Xpa-005 46175222-46185649 nonsense_mediated_decay
  ENSMUST00000141318 Xpa-004 46175222-46185682 processed_transcript
  ENSMUST00000142380 Xpa-003 46182969-46196304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000030013ENSMUST00000132358ENSMUST00000142380
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000030013 N/A 21.191±3.18 18.522±1.08 19.672±2.72 14.451±3.34 18.819±4.37 9.631±0.77 22.321±3.36 36.796±6.55 N/A
ENSMUST00000132358 N/A N/A N/A N/A N/A N/A N/A N/A 52.633±0.00 17.097±0.00
ENSMUST00000142380 21.183±0.00 N/A N/A N/A 16.263±0.00 N/A N/A N/A 29.230±6.81 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_0002JD CIL_0002JD_0002 CGP 4:46114746-46172403
CIL_00029T CIL_00029T_0002 CGP 4:46138613-46196311
CIL_00029U CIL_00029U_0002 CGP 4:46155347-46346412

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003684 ISS damaged DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006281 IMP DNA repair
GO:0006289 IMP nucleotide-excision repair
GO:0006979 IMP response to oxidative stress
GO:0008630 IMP intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IMP response to UV
GO:0009636 IMP response to toxic substance
GO:0019904 IEA protein domain specific binding
GO:0035264 IGI multicellular organism growth
GO:0042803 IEA protein homodimerization activity
GO:0045171 IEA intercellular bridge
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038114 xpa xeroderma pigmentosum, complementation group A protein_coding Danio_rerio
ENSG00000136936 XPA xeroderma pigmentosum, complementation group A protein_coding Homo_sapiens

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