C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xeroderma pigmentosum, complementation group A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375128 XPA-001 ENSG00000136936 9606 - 9:97674909-97697357 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375128 5.501±0.00 7.305±0.00 0.565±0.00 5.490±3.50 5.742±3.31 3.447±2.41 1.274±0.69 3.402±1.98 3.279±0.13 1.732±0.12 1.866±0.95 5.505±2.41 2.833±0.16 5.722±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029T CIL_00029T_0001 CGP 9:97633626-97697357
CIL_00029U CIL_00029U_0001 CGP 9:97674909-97856715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003684 IDA:IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IDA DNA replication factor A complex
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0006281 TAS DNA repair
GO:0006289 TAS:IEA nucleotide-excision repair
GO:0006979 IEA response to oxidative stress
GO:0008630 IEA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IEA response to UV
GO:0009636 IEA response to toxic substance
GO:0019904 IPI protein domain specific binding
GO:0035264 IEA multicellular organism growth
GO:0042803 IPI protein homodimerization activity
GO:0045171 IDA intercellular bridge
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030013 Xpa-001 protein_coding Mus_musculus 0 763
ENSMUST00000142380 Xpa-003 protein_coding Mus_musculus 0 580
ENSMUST00000058232 Xpa-002 protein_coding Mus_musculus 0 580
ENSMUST00000141318 Xpa-004 processed_transcript Mus_musculus 0 534
ENSMUST00000132358 Xpa-005 nonsense_mediated_decay Mus_musculus 0 351
ENSMUST00000130051 Xpa-006 processed_transcript Mus_musculus 2e-35 154

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