C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xeroderma pigmentosum, complementation group A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462523 XPA-003 ENSG00000136936 9606 - 9:97674909-97697293 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungOvaryPlacentaTestisENST00000462523
Transcript ID Heart Kidney Lung Ovary Placenta Testis
ENST00000462523 0.440±0.00 1.546±0.00 0.525±0.00 1.251±0.31 0.328±0.00 1.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029T CIL_00029T_0001 CGP 9:97633626-97697357
CIL_00029U CIL_00029U_0001 CGP 9:97674909-97856715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IEA damaged DNA binding
GO:0005634 IDA:IEA nucleus
GO:0006289 IEA nucleotide-excision repair
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030013 Xpa-001 protein_coding Mus_musculus 0 582
ENSMUST00000058232 Xpa-002 protein_coding Mus_musculus 0 582
ENSMUST00000142380 Xpa-003 protein_coding Mus_musculus 0 580
ENSMUST00000132358 Xpa-005 nonsense_mediated_decay Mus_musculus 0 503
ENSMUST00000141318 Xpa-004 processed_transcript Mus_musculus 0 353
ENSMUST00000130051 Xpa-006 processed_transcript Mus_musculus 3e-35 154

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