C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: xeroderma pigmentosum, complementation group A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496104 XPA-002 ENSG00000136936 9606 - 9:97684961-97697295 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartENST00000496104
Transcript ID Adipose Heart
ENST00000496104 3.920±0.00 1.788±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029T CIL_00029T_0001 CGP 9:97633626-97697357
CIL_00029U CIL_00029U_0001 CGP 9:97674909-97856715

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142380 Xpa-003 protein_coding Mus_musculus 0 239
ENSMUST00000030013 Xpa-001 protein_coding Mus_musculus 0 239
ENSMUST00000132358 Xpa-005 nonsense_mediated_decay Mus_musculus 0 239
ENSMUST00000058232 Xpa-002 protein_coding Mus_musculus 0 239
ENSMUST00000141318 Xpa-004 processed_transcript Mus_musculus 0 217
ENSMUST00000130051 Xpa-006 processed_transcript Mus_musculus 0.00000000002 73

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