C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231173 PCDHB15-001 ENSG00000113248 9606 + 5:141245349-141249365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000231173
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000231173 1.249±0.00 1.932±0.43 1.168±0.26 2.298±0.00 0.488±0.00 1.726±0.00 2.497±0.00 0.162±0.08 1.615±1.18 0.530±0.04 4.545±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097609 Pcdhb22-201 protein_coding Mus_musculus 0 1498
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1051
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1027
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 979
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 931
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 913
ENSMUST00000061717 Pcdhb6-201 protein_coding Mus_musculus 0 905
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 883
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 856
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 845
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 821
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 797
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 0 785

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